CRAN Package Check Results for Package HDclust

Last updated on 2019-08-25 05:46:49 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 74.79 324.62 399.41 OK
r-devel-linux-x86_64-debian-gcc 1.0.3 53.90 221.33 275.23 OK
r-devel-linux-x86_64-fedora-clang 1.0.3 468.66 OK
r-devel-linux-x86_64-fedora-gcc 1.0.3 429.62 OK
r-devel-windows-ix86+x86_64 1.0.3 178.00 298.00 476.00 OK
r-patched-linux-x86_64 1.0.3 65.17 290.02 355.19 OK
r-patched-solaris-x86 1.0.3 368.50 WARN
r-release-linux-x86_64 1.0.3 64.88 289.51 354.39 OK
r-release-windows-ix86+x86_64 1.0.3 194.00 380.00 574.00 OK
r-release-osx-x86_64 1.0.3 OK
r-oldrel-windows-ix86+x86_64 1.0.3 188.00 358.00 546.00 OK
r-oldrel-osx-x86_64 1.0.3 OK

Check Details

Version: 1.0.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘HDclust.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    0% 10 20 30 40 50 60 70 80 90 100%
    [----|----|----|----|----|----|----|----|----|----|
    **************************************************|
    Warning: stack imbalance in 'lazyLoadDBfetch', 63 then 82
    
     *** caught segfault ***
    address e910c484, cause 'memory not mapped'
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message,
    Traceback:
     1: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
     2: evaluate::evaluate(...)
     3: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
     4: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
     5: block_exec(params)
     6: call_block(x)
     7: process_group.block(group)
     8: process_group(group)
     9: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get(") "), ") ") }) })
    10: process_file(text, output)
    11: knit(input, text = text, envir = envir, quiet = quiet)
    12: knit2html(..., force_v1 = TRUE)
    13: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    14: vweave(...)
    15: engine$weave(file, quiet = quiet, encoding = enc)
    16: doTryCatch(return(expr), name, parentenv, handler)
    17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    18: tryCatchList(expr, classes, parentenv, handlers)
    19: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    20: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/HDclust.Rcheck/vign_test/HDclust", ser_elibs = "/tmp/Rtmp6Zaa7K/file49d81f1e1f61.rds")
    An irrecoverable exception occurred. R is aborting now ...
     output_handler = output_handler, include_timing = include_timing)
     2: evaluate::evaluate(...)
     3: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
     4: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
     5: block_exec(params)
     6: call_block(x)
     7: process_group.block(group)
     8: process_group(group)
     9: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get(") "), ") ") }) })
    10: process_file(text, output)
    11: knit(input, text = text, envir = envir, quiet = quiet)
    12: knit2html(..., force_v1 = TRUE)
    13: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    14: vweave(...)
    15: engine$weave(file, quiet = quiet, encoding = enc)
    16: doTryCatch(return(expr), name, parentenv, handler)
    17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    18: tryCatchList(expr, classes, parentenv, handlers)
    19: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    20: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/HDclust.Rcheck/vign_test/HDclust", ser_elibs = "/tmp/Rtmp6Zaa7K/file49d81f1e1f61.rds")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86