CRAN Package Check Results for Package Mega2R

Last updated on 2019-09-16 05:47:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.5 45.73 372.97 418.70 OK
r-devel-linux-x86_64-debian-gcc 1.0.5 38.60 291.24 329.84 OK
r-devel-linux-x86_64-fedora-clang 1.0.5 545.55 OK
r-devel-linux-x86_64-fedora-gcc 1.0.5 534.59 OK
r-devel-windows-ix86+x86_64 1.0.5 125.00 475.00 600.00 OK
r-patched-linux-x86_64 1.0.5 43.07 356.17 399.24 OK
r-patched-solaris-x86 1.0.5 4.40 ERROR --no-vignettes
r-release-linux-x86_64 1.0.5 43.77 352.11 395.88 OK
r-release-windows-ix86+x86_64 1.0.5 76.00 450.00 526.00 OK
r-release-osx-x86_64 1.0.5 ERROR
r-oldrel-windows-ix86+x86_64 1.0.5 99.00 448.00 547.00 OK
r-oldrel-osx-x86_64 1.0.5 WARN

Check Details

Version: 1.0.5
Flags: --no-vignettes
Check: package dependencies
Result: ERROR
    Package required but not available: ‘gdsfmt’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-patched-solaris-x86

Version: 1.0.5
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'gdsfmt', 'AnnotationDbi', 'GenomeInfoDb'
    
    Packages suggested but not available for checking:
     'TxDb.Hsapiens.UCSC.hg19.knownGene', 'org.Hs.eg.db'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.0.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Flavor: r-oldrel-osx-x86_64

Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: SKAT
    Loading required package: pedgene
    Loading required package: Matrix
    Loading required package: CompQuadForm
    Loading required package: survey
    Loading required package: grid
    Loading required package: survival
    
    Attaching package: 'survey'
    
    The following object is masked from 'package:graphics':
    
     dotchart
    
    Loading required package: kinship2
    Loading required package: quadprog
    Loading required package: gdsfmt
    Quitting from lines 694-696 (mega2rtutorial.Rmd)
    Error: processing vignette 'mega2rtutorial.Rmd' failed with diagnostics:
    there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
    Execution halted
Flavor: r-oldrel-osx-x86_64