CRAN Package Check Results for Package MicroSEC

Last updated on 2021-12-01 05:59:31 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 20.20 347.12 367.32 OK
r-devel-linux-x86_64-debian-gcc 1.1.3 18.15 281.93 300.08 OK
r-devel-linux-x86_64-fedora-clang 1.1.3 474.95 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.3 442.03 NOTE
r-devel-windows-x86_64-new-UL 1.1.3 36.00 661.00 697.00 OK
r-devel-windows-x86_64-new-TK 1.1.3 NOTE
r-devel-windows-x86_64-old 1.1.3 31.00 388.00 419.00 OK
r-patched-linux-x86_64 1.1.3 19.73 326.54 346.27 OK
r-patched-solaris-x86 1.1.3 372.60 NOTE
r-release-linux-x86_64 1.1.3 21.30 327.70 349.00 OK
r-release-macos-arm64 1.1.3 NOTE
r-release-macos-x86_64 1.1.3 ERROR
r-release-windows-ix86+x86_64 1.1.3 47.00 510.00 557.00 OK
r-oldrel-macos-x86_64 1.1.3 NOTE
r-oldrel-windows-ix86+x86_64 1.1.3 38.00 384.00 422.00 OK

Check Details

Version: 1.1.3
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘GenomicAlignments’ ‘R.utils’ ‘data.table’ ‘magrittr’ ‘tidyr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.1.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BSgenome.Mmusculus.UCSC.mm10’
Flavors: r-release-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19',
     'BSgenome.Mmusculus.UCSC.mm10'
Flavor: r-release-macos-x86_64

Version: 1.1.3
Check: examples
Result: ERROR
    Running examples in ‘MicroSEC-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: fun_load_genome
    > ### Title: Genome loading function.
    > ### Aliases: fun_load_genome
    >
    > ### ** Examples
    >
    > fun_load_genome("Human")
    Error: Install BSgenome.Hsapiens.UCSC.hg38 package.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘my-vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Quitting from lines 118-178 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    Install BSgenome.Hsapiens.UCSC.hg38 package.
    --- failed re-building ‘my-vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘my-vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64