CRAN Package Check Results for Package asremlPlus

Last updated on 2021-11-27 05:49:30 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.3-21 NOTE
r-devel-linux-x86_64-debian-gcc 4.3-21 15.23 154.38 169.61 NOTE
r-devel-linux-x86_64-fedora-clang 4.3-21 281.69 NOTE
r-devel-linux-x86_64-fedora-gcc 4.3-21 270.33 NOTE
r-devel-windows-x86_64-new-UL 4.3-21 43.00 282.00 325.00 NOTE
r-devel-windows-x86_64-new-TK 4.3-21 NOTE
r-devel-windows-x86_64-old 4.3-21 27.00 244.00 271.00 NOTE
r-patched-linux-x86_64 4.3-21 26.71 201.51 228.22 NOTE
r-patched-solaris-x86 4.3-21 314.90 NOTE
r-release-linux-x86_64 4.3-21 NOTE
r-release-macos-arm64 4.3-21 NOTE
r-release-macos-x86_64 4.3-21 NOTE
r-release-windows-ix86+x86_64 4.3-21 36.00 249.00 285.00 NOTE
r-oldrel-macos-x86_64 4.3-21 ERROR
r-oldrel-windows-ix86+x86_64 4.3-21 40.00 250.00 290.00 ERROR

Check Details

Version: 4.3-21
Check: package dependencies
Result: NOTE
    Package which this enhances but not available for checking: 'asreml'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 4.3-21
Check: tests
Result: ERROR
     Running ‘testthat.R’ [18s/18s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     #### Test for facCombine.alldiffs on Ladybird with lme4
     #### Test for as.predictions.frame on Ladybird with lme4
     #### Test for addBacktransforms on WaterRunoff with lme4
     #### Test for boot using wheat example with asreml4
     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (1)
     • asreml cannot be loaded (59)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Failure (test4alldiffslme.r:338:5): alldiffs_lme4 ───────────────────────────
     `... <- NULL` did not produce any warnings.
    
     [ FAIL 1 | WARN 0 | SKIP 60 | PASS 128 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 4.3-21
Check: tests
Result: ERROR
     Running 'testthat.R' [45s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     > #Need to execute the following for manual checking
     > #Sys.setenv(NOT_CRAN = "true")
     > #setwd("~/Analyses/R/asremlPlus/tests/")
     > #test_check("asremlPlus", filter = "3Wheat")
     > #test_check("asremlPlus", filter = "4Wheat")
     > #test_check("asremlPlus", filter = "3")
     > test_check("asremlPlus", filter = "4")
     Loading required package: asremlPlus
     ASReml-R needs to be loaded if the mixed-model functions are to be used.
    
     ASReml-R is available from VSNi. Please visit http://www.vsni.co.uk/ for more information.
    
     #### Test for changeTerms using wheat example with asreml4
     #### Test estimateV for chick pea example with asreml4
     #### Test estimateV for Wheat example with asreml4
     #### Test estimateV specials for Cane with asreml4
     #### Test estimateV specials for HEB25 with asreml4
     #### Test estimateV at, fa, rr functions for MET data with asreml4
     #### Test estimateV str, spl & dev for orange with asreml4
     #### Test for predictions.frame on Oats with asreml4
     #### Test for Intercept prediction on Oats with asreml4
     #### Test for predictPlus.asreml4
     #### Test for plotPredictions.asreml4
     #### Test for predictPresent.asreml4
     #### Test for error when no predictions.asreml4
     #### Test for plotPvalues.asreml4
     #### Test for plotPvalues.asreml4
     #### Test for factor combinations asreml4
     #### Test for recalcLSD.alldiffs4
     #### Test for LSDby4
     #### Test for REMLRT with asreml4
     #### Test for wheat76 example with asreml4
     #### Test for IC with wheat94 using asreml4
     #### Test for getFormulae with wheat94 using asreml4
     #### Test for chooseModel.data.frame with asreml4
     #### Test for chooseModel.asrtests with asreml4
     #### Test for testing at terms with asreml4
     #### Test for testing MET at terms with asreml4
     #### Test for at terms in testswapran with asreml4
     #### Test for spline testing with asreml4
     #### Test for reparamSigDevn.asrtests with asreml4
     #### Test for changeModelOnIC with wheat94 using asreml4
     #### Test for changeModelOnIC example using asreml4
     #### Test for parallel processing with asreml4
     #### Test for simulate.asreml with asreml4
     #### Test for sort.alldiffs on Smarthouse with asreml4
     #### Test for sort.predictions.frame on WaterRunoff with asreml4
     #### Test for sort.alldiffs on Oats with asreml4
     #### Test for sort in standard order for classify on Oats with asreml4
     #### Test variofaces using Atieno with asreml4
     #### Test for wheat76 example with asreml4
     #### Test for allDifferences.data.frame sort.alldiffs on Oats with asreml4
     #### Test for LSDs and halfLSIs on system data with asreml4
     #### Test for LSD on Oats with asreml4
     #### Test for sort.alldiffs on Smarthouse with asreml4
     #### Test for LSD with sort.alldiffs on Smarthouse with asreml4
     #### Test for LSDsupplied on Oats with asreml4
     #### Test for LSD on WaterRunoff with asreml4
     #### Test for exploreLSDs on WaterRunoff with asreml4
     #### Test for exploreLSDs on Oats with asreml4
     #### Test for sort.alldiffs on WaterRunoff with asreml4
     #### Test for sort.alldiffs on Oats with asreml4
     #### Test for subset.alldiffs on Smarthouse with asreml4
     #### Test for facCombine.alldiffs on Ladybird with asreml4
     #### Test for facRecast.alldiffs on Ladybird with asreml4
     #### Test for linear.transformation on Oats with asreml4
     #### Test for linear.transformation on WaterRunoff with asreml4
     #### Test for addBacktransforms on WaterRunoff with asreml4
     #### Test for ratioTansforms on system data with asreml4
     #### Test for ratioTansforms on the Oats data with asreml4
     #### Test for predictions.frame on Oats with lme4
     #### Test for LSD.frame on Oats with lme4
     #### Test for allDifferences.data.frame on Oats with lme4
     #### Test for alldiffs validity on Oats with lme4
     #### Test for linTransform on WaterRunoff with lme4
    
     Table of information (partially) aliased with previous sources derived from the same formula
    
     Source df Alias aefficiency eefficiency order
     Species 1 unknown 0.1667 0.1667 1
    
    
     #### Predictions for transform(s) transform(s) from Sources:Species
    
     The original predictions, obtained as described below, have
     been linearly transformed.
     The original predictions, obtained as described below, have
     been linearly transformed to form estimated marginal means.
     Combination predicted.value standard.error upper.Confidence.limit
     1 S. iqscjbogxah -0.04097328 0.07296427 0.1028683
     2 S. oymwjrcnepv -0.26708439 0.07296427 -0.1232428
     3 S. ocphawvtlgi -0.30086748 0.07347407 -0.1560209
     4 S. hbpgtylxqku -0.39587830 0.07338042 -0.2512163
     5 S. orcxszbujml -0.42885687 0.07309091 -0.2847656
     6 S. xeqackngdrt -0.49632334 0.11711989 -0.2654334
     7 S. tkujbvipoyr -0.55659120 0.11715667 -0.3256288
     lower.Confidence.limit est.status
     1 -0.1848149 Estimable
     2 -0.4109260 Estimable
     3 -0.4457141 Estimable
     4 -0.5405403 Estimable
     5 -0.5729481 Estimable
     6 -0.7272132 Estimable
     7 -0.7875536 Estimable
    
    
     LSD values
    
     minimum LSD = 0.1252489
    
     mean LSD = 0.1868838
    
     maximum LSD = 0.2751421
    
     (sed range / mean sed = 0.802 )
    
     #### Test for alldiffs functions on WaterRunoff with lme4
     #### Test for exploreLSD on WaterRunoff with lme4
     #### Test for sort.alldiffs on Smarthouse with lme4
     #### Test for sort.alldiffs on WateRunoff with lme4
     #### Test for facCombine.alldiffs on Ladybird with lme4
     #### Test for as.predictions.frame on Ladybird with lme4
     #### Test for addBacktransforms on WaterRunoff with lme4
     #### Test for boot using wheat example with asreml4
     == Skipped tests ===============================================================
     * On CRAN (1)
     * asreml cannot be loaded (59)
    
     == Failed tests ================================================================
     -- Failure (test4alldiffslme.r:338:5): alldiffs_lme4 ---------------------------
     `... <- NULL` did not produce any warnings.
    
     [ FAIL 1 | WARN 0 | SKIP 60 | PASS 128 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64