CRAN Package Check Results for Package genetics

Last updated on 2019-01-17 05:50:04 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.8.1 4.53 63.85 68.38 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.8.1 3.91 48.07 51.98 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.8.1 77.72 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.8.1 71.99 NOTE
r-devel-windows-ix86+x86_64 1.3.8.1 6.00 96.00 102.00 NOTE
r-patched-linux-x86_64 1.3.8.1 3.85 58.72 62.57 NOTE
r-patched-solaris-x86 1.3.8.1 93.20 NOTE
r-release-linux-x86_64 1.3.8.1 4.87 58.90 63.77 NOTE
r-release-windows-ix86+x86_64 1.3.8.1 9.00 90.00 99.00 NOTE
r-release-osx-x86_64 1.3.8.1 NOTE
r-oldrel-windows-ix86+x86_64 1.3.8.1 8.00 93.00 101.00 NOTE
r-oldrel-osx-x86_64 1.3.8.1 NOTE

Check Details

Version: 1.3.8.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     diseq.ci summary.LD.data.frame
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.3.8.1
Check: R code for possible problems
Result: NOTE
    HWE.chisq.genotype: no visible global function definition for
     ‘chisq.test’
    HWE.chisq.genotype: no visible global function definition for ‘pchisq’
    LD.genotype: no visible global function definition for ‘optimize’
    LD.genotype: no visible global function definition for ‘pchisq’
    LDplot: no visible global function definition for ‘matplot’
    LDplot: no visible global function definition for ‘axis’
    LDplot: no visible global function definition for ‘title’
    LDtable: no visible global function definition for ‘heat.colors’
    LDtable: no visible global function definition for ‘image’
    LDtable: no visible global function definition for ‘abline’
    LDtable: no visible global function definition for ‘axis’
    LDtable: no visible global function definition for ‘par’
    LDtable: no visible global function definition for ‘strwidth’
    LDtable: no visible global function definition for ‘strheight’
    LDtable: no visible global function definition for ‘text’
    LDtable: no visible global function definition for ‘title’
    diseq.ci : <anonymous>: no visible global function definition for
     ‘quantile’
    groupGenotype: no visible global function definition for ‘mapLevels<-’
    groupGenotype: no visible global function definition for ‘as.levelsMap’
    hapenum: no visible global function definition for ‘complete.cases’
    hapfreq: no visible global function definition for ‘complete.cases’
    hapshuffle: no visible global function definition for ‘runif’
    plot.LD.data.frame: no visible global function definition for
     ‘heat.colors’
    plot.LD.data.frame: no visible global function definition for ‘par’
    plot.genotype: no visible global function definition for ‘barplot’
    power.casectrl.plot: no visible global function definition for
     ‘matplot’
    power.casectrl.plot: no visible global function definition for ‘abline’
    power.casectrl.plot: no visible global function definition for ‘legend’
    power.casectrl.plot: no visible global function definition for
     ‘locator’
    pw: no visible global function definition for ‘lm’
    pw: no visible global function definition for ‘plot’
    pw: no visible global function definition for ‘anova’
    simu.genotype.conti: no visible global function definition for ‘lm’
    simu.genotype.conti: no visible global function definition for ‘plot’
    simu.genotype.conti: no visible global function definition for ‘anova’
    write.marker.file: no visible global function definition for
     ‘write.table’
    write.pedigree.file: no visible global function definition for
     ‘write.table’
    write.pop.file: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline anova as.levelsMap axis barplot chisq.test complete.cases
     heat.colors image legend lm locator mapLevels<- matplot optimize par
     pchisq plot quantile runif strheight strwidth text title write.table
    Consider adding
     importFrom("grDevices", "heat.colors")
     importFrom("graphics", "abline", "axis", "barplot", "image", "legend",
     "locator", "matplot", "par", "plot", "strheight",
     "strwidth", "text", "title")
     importFrom("stats", "anova", "chisq.test", "complete.cases", "lm",
     "optimize", "pchisq", "quantile", "runif")
     importFrom("utils", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.3.8.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘GeneticsDesign’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.3.8.1
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'diseq':
     ‘diseq.ci’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64