CRAN Package Check Results for Package idmodelr

Last updated on 2020-05-30 05:48:06 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.1 8.72 71.54 80.26 OK
r-devel-linux-x86_64-debian-gcc 0.3.1 6.59 54.68 61.27 OK
r-devel-linux-x86_64-fedora-clang 0.3.1 109.14 ERROR
r-devel-linux-x86_64-fedora-gcc 0.3.1 95.51 ERROR
r-devel-windows-ix86+x86_64 0.3.1 27.00 136.00 163.00 OK
r-patched-linux-x86_64 0.3.1 8.05 69.08 77.13 OK
r-patched-solaris-x86 0.3.1 136.40 ERROR
r-release-linux-x86_64 0.3.1 8.16 70.43 78.59 OK
r-release-osx-x86_64 0.3.1 OK
r-release-windows-ix86+x86_64 0.3.1 20.00 171.00 191.00 OK
r-oldrel-osx-x86_64 0.3.1 WARN
r-oldrel-windows-ix86+x86_64 0.3.1 16.00 93.00 109.00 OK

Check Details

Version: 0.3.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [8s/13s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     >
     > library(testthat)
     > library(idmodelr)
     >
     > test_check("idmodelr")
     ── 1. Failure: Holding out of time works as expected (@test-combine_to_age_model
     `df_age` not equal to combine_to_age_model(df, age_com = 2, hold_out_var = "time").
     Names: 3 string mismatches
     Component 1: Mean relative difference: 1.666667
     Component 2: Mean relative difference: 0.625
     Component 3: Mean relative difference: 0.7272727
    
     ── 2. Failure: Specifying compartments, automatically specifies hold out variabl
     `df_age` not equal to combine_to_age_model(df, age_com = 2, compartments = c("S", "E")).
     Names: 3 string mismatches
     Component 1: Mean relative difference: 1.666667
     Component 2: Mean relative difference: 0.625
     Component 3: Mean relative difference: 0.7272727
    
     ── 3. Failure: Specifying hold out variables, automatically specifies compartmen
     `df_age` not equal to combine_to_age_model(df, age_com = 2, hold_out_var = "time").
     Names: 3 string mismatches
     Component 1: Mean relative difference: 1.666667
     Component 2: Mean relative difference: 0.625
     Component 3: Mean relative difference: 0.7272727
    
     ── 4. Failure: generate_parameter_permutations can use a single parameter sample
     `df_results` not equal to `df_check`.
     Names: 2 string mismatches
     Component 3: Mean absolute difference: 1
     Component 4: Mean relative difference: 1
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 48 | SKIPPED: 41 | WARNINGS: 0 | FAILED: 4 ]
     1. Failure: Holding out of time works as expected (@test-combine_to_age_model.R#25)
     2. Failure: Specifying compartments, automatically specifies hold out variables (@test-combine_to_age_model.R#31)
     3. Failure: Specifying hold out variables, automatically specifies compartments (@test-combine_to_age_model.R#37)
     4. Failure: generate_parameter_permutations can use a single parameter sample (@test-generate_parameter_permutations.R#26)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.1
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     >
     > library(testthat)
     > library(idmodelr)
     >
     > test_check("idmodelr")
     ── 1. Failure: Holding out of time works as expected (@test-combine_to_age_model
     `df_age` not equal to combine_to_age_model(df, age_com = 2, hold_out_var = "time").
     Names: 3 string mismatches
     Component 1: Mean relative difference: 1.666667
     Component 2: Mean relative difference: 0.625
     Component 3: Mean relative difference: 0.7272727
    
     ── 2. Failure: Specifying compartments, automatically specifies hold out variabl
     `df_age` not equal to combine_to_age_model(df, age_com = 2, compartments = c("S", "E")).
     Names: 3 string mismatches
     Component 1: Mean relative difference: 1.666667
     Component 2: Mean relative difference: 0.625
     Component 3: Mean relative difference: 0.7272727
    
     ── 3. Failure: Specifying hold out variables, automatically specifies compartmen
     `df_age` not equal to combine_to_age_model(df, age_com = 2, hold_out_var = "time").
     Names: 3 string mismatches
     Component 1: Mean relative difference: 1.666667
     Component 2: Mean relative difference: 0.625
     Component 3: Mean relative difference: 0.7272727
    
     ── 4. Failure: generate_parameter_permutations can use a single parameter sample
     `df_results` not equal to `df_check`.
     Names: 2 string mismatches
     Component 3: Mean absolute difference: 1
     Component 4: Mean relative difference: 1
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 48 | SKIPPED: 41 | WARNINGS: 0 | FAILED: 4 ]
     1. Failure: Holding out of time works as expected (@test-combine_to_age_model.R#25)
     2. Failure: Specifying compartments, automatically specifies hold out variables (@test-combine_to_age_model.R#31)
     3. Failure: Specifying hold out variables, automatically specifies compartments (@test-combine_to_age_model.R#37)
     4. Failure: generate_parameter_permutations can use a single parameter sample (@test-generate_parameter_permutations.R#26)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 0.3.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘model_details.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 25-32 (model_details.Rmd)
    Error: processing vignette 'model_details.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘model_details.Rmd’
    
    --- re-building ‘parameter_details.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 24-31 (parameter_details.Rmd)
    Error: processing vignette 'parameter_details.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘parameter_details.Rmd’
    
    --- re-building ‘resources.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘resources.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘model_details.Rmd’ ‘parameter_details.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.3.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘model_details.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 25-32 (model_details.Rmd)
    Error: processing vignette 'model_details.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘model_details.Rmd’
    
    --- re-building ‘parameter_details.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 24-31 (parameter_details.Rmd)
    Error: processing vignette 'parameter_details.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘parameter_details.Rmd’
    
    --- re-building ‘resources.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘resources.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘model_details.Rmd’ ‘parameter_details.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-osx-x86_64