CRAN Package Check Results for Package qra

Last updated on 2022-01-21 05:52:19 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.7 OK
r-devel-linux-x86_64-debian-gcc 0.2.7 9.14 191.26 200.40 OK
r-devel-linux-x86_64-fedora-clang 0.2.7 313.75 OK
r-devel-linux-x86_64-fedora-gcc 0.2.7 218.06 OK
r-devel-windows-x86_64-new-UL 0.2.7 27.00 328.00 355.00 OK
r-devel-windows-x86_64-new-TK 0.2.7 OK
r-patched-linux-x86_64 0.2.7 9.01 252.19 261.20 OK
r-release-linux-x86_64 0.2.7 6.88 250.89 257.77 OK
r-release-macos-arm64 0.2.7 OK
r-release-macos-x86_64 0.2.7 OK
r-release-windows-ix86+x86_64 0.2.7 23.00 314.00 337.00 OK
r-oldrel-macos-x86_64 0.1.8 WARN

Check Details

Version: 0.1.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘MeBrPlot.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    --- finished re-building ‘MeBrPlot.Rmd’
    
    --- re-building ‘countDists.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘countDists.Rmd’
    
    --- re-building ‘timeMortality.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Warning in checkMatrixPackageVersion() :
     Package version inconsistency detected.
    TMB was built with Matrix version 1.3.2
    Current Matrix version is 1.3.4
    Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in (function (start, objective, gradient = NULL, hessian = NULL, :
     NA/NaN function evaluation
    Warning in fitTMB(TMBStruc) :
     Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Warning in Matrix::sparseMatrix(dims = c(0, 0), i = integer(0), j = integer(0), :
     'giveCsparse' has been deprecated; setting 'repr = "T"' for you
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Warning in fitTMB(TMBStruc) :
     Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Error in .Call("FreeADFunObject", ptr, PACKAGE = DLL) :
     "FreeADFunObject" not available for .Call() for package "glmmTMB"
    Calls: <Anonymous>
    Quitting from lines 334-384 (timeMortality.Rmd)
    Error: processing vignette 'timeMortality.Rmd' failed with diagnostics:
    cannot pop the top-level viewport ('grid' and 'graphics' output mixed?)
    --- failed re-building ‘timeMortality.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘timeMortality.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64