CRAN Package Check Results for Package rmdcev

Last updated on 2019-09-19 05:47:29 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.0 313.74 154.37 468.11 NOTE
r-devel-linux-x86_64-debian-gcc 0.9.0 321.65 126.92 448.57 NOTE
r-devel-linux-x86_64-fedora-clang 0.9.0 711.11 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.0 750.93 NOTE
r-devel-windows-ix86+x86_64 0.9.0 746.00 252.00 998.00 NOTE
r-patched-linux-x86_64 0.9.0 313.38 154.92 468.30 NOTE
r-patched-solaris-x86 0.9.0 638.70 ERROR
r-release-linux-x86_64 0.9.0 309.62 158.23 467.85 NOTE
r-release-windows-ix86+x86_64 0.9.0 492.00 252.00 744.00 NOTE
r-release-osx-x86_64 0.9.0 NOTE
r-oldrel-windows-ix86+x86_64 0.9.0 490.00 245.00 735.00 NOTE
r-oldrel-osx-x86_64 0.9.0 NOTE

Check Details

Version: 0.9.0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.9.0
Check: installed package size
Result: NOTE
     installed size is 60.8Mb
     sub-directories of 1Mb or more:
     libs 60.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.9.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘rlang’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.9.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [90s/118s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     >
     > library(testthat)
     > library(rmdcev)
     Loading required package: Rcpp
     > test_check("rmdcev")
    
     SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0.06 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 600 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: WARNING: No variance estimation is
     Chain 1: performed for num_warmup < 20
     Chain 1:
     Chain 1: Iteration: 1 / 10 [ 10%] (Warmup)
     Chain 1: Iteration: 2 / 10 [ 20%] (Warmup)
     Chain 1: Iteration: 3 / 10 [ 30%] (Warmup)
     Chain 1: Iteration: 4 / 10 [ 40%] (Warmup)
     Chain 1: Iteration: 5 / 10 [ 50%] (Warmup)
     Chain 1: Iteration: 6 / 10 [ 60%] (Sampling)
     Chain 1: Iteration: 7 / 10 [ 70%] (Sampling)
     Chain 1: Iteration: 8 / 10 [ 80%] (Sampling)
     Chain 1: Iteration: 9 / 10 [ 90%] (Sampling)
     Chain 1: Iteration: 10 / 10 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.9 seconds (Warm-up)
     Chain 1: 0.35 seconds (Sampling)
     Chain 1: 1.25 seconds (Total)
     Chain 1:
     Model run using rmdcev for R, version 0.9.0
     Estimation method : Bayes
     Model type : hybrid0 specification
     Number of classes : 1
     Number of individuals : 499
     Number of non-numeraire alts : 17
     Estimated parameters : 35
     LL : -14668.54
     Number of chains : 1
     Number of warmup draws per chain : 5
     Total post-warmup sample : 5
     Time taken (hh:mm:ss) : 00:00:3.25
    
     Average consumption of non-numeraire alternatives:
     1 2 3 4 5 6 7 8 9 10 11 12 13
     6.48 12.29 2.34 9.05 3.85 22.02 4.45 39.60 0.64 1.14 0.84 0.27 4.49
     14 15 16 17
     3.04 9.22 2.37 1.49
    
    
     Psi specification:
     ~
     factor(good_name) - 1
     Parameter estimates --------------------------------
     Estimate Std.err z.stat n_eff Rhat
     psi_factor(good_name)beach 1.002 0 Inf NA NA
     psi_factor(good_name)birding 0.104 0 Inf NA NA
     psi_factor(good_name)camping -0.365 0 -Inf NA NA
     psi_factor(good_name)cycling 0.619 0 Inf NA NA
     psi_factor(good_name)fish -0.606 0 -Inf NA NA
     psi_factor(good_name)garden 0.950 0 Inf NA NA
     psi_factor(good_name)golf 0.300 0 Inf NA NA
     psi_factor(good_name)hiking 2.249 0 Inf NA NA
     psi_factor(good_name)hunt_birds -1.000 0 -Inf NA NA
     psi_factor(good_name)hunt_large 0.139 0 Inf NA NA
     psi_factor(good_name)hunt_trap 0.179 0 Inf NA NA
     psi_factor(good_name)hunt_waterfowl -1.834 0 -Inf NA NA
     psi_factor(good_name)motor_land -1.519 0 -Inf NA NA
     psi_factor(good_name)motor_water 0.082 0 Inf NA NA
     psi_factor(good_name)photo -0.554 0 -Inf NA NA
     psi_factor(good_name)ski_cross -0.302 0 -Inf NA NA
     psi_factor(good_name)ski_down -0.129 0 -Inf NA NA
     gamma1 0.679 0 Inf NA NA
     gamma2 1.184 0 Inf NA NA
     gamma3 1.471 0 Inf NA NA
     gamma4 1.450 0 Inf NA NA
     gamma5 2.947 0 Inf NA NA
     gamma6 2.959 0 Inf NA NA
     gamma7 2.428 0 Inf NA NA
     gamma8 1.800 0 Inf NA NA
     gamma9 0.505 0 Inf NA NA
     gamma10 0.539 0 Inf NA NA
     gamma11 0.302 0 Inf NA NA
     gamma12 0.457 0 Inf NA NA
     gamma13 0.754 0 Inf NA NA
     gamma14 1.176 0 Inf NA NA
     gamma15 1.978 0 Inf NA NA
     gamma16 2.990 0 Inf NA NA
     gamma17 2.097 0 Inf NA NA
     scale 2.562 0 Inf NA NA
     Note: All alpha parameters fixed to 1e-3.
     Note: For each parameter, n_eff is a crude measure of effective sample size, and Rhat is the potential scale reduction factor on split chains (at convergence, Rhat=1)
    
     Model run using rmdcev for R, version 0.9.0
     Estimation method : MLE
     Model type : hybrid0 specification
     Number of classes : 1
     Number of individuals : 99
     Number of non-numeraire alts : 17
     Estimated parameters : 19
     LL : -2684.77
     AIC : 5407.53
     BIC : 5456.84
     Standard errors calculated using : Delta method
     Exit of MLE : successful convergence
     Time taken (hh:mm:ss) : 00:00:0.78
    
     Average consumption of non-numeraire alternatives:
     1 2 3 4 5 6 7 8 9 10 11 12 13
     6.86 14.03 2.70 9.34 4.85 25.62 6.92 38.30 0.53 1.30 0.61 0.37 3.02
     14 15 16 17
     3.05 10.67 1.55 2.17
    
    
     Psi specification:
     ~
     1
     Parameter estimates --------------------------------
     Estimate Std.err z.stat
     psi_(Intercept) -7.625 0.110 -69.32
     gamma1 6.576 1.578 4.17
     gamma2 12.290 4.026 3.05
     gamma3 4.545 1.249 3.64
     gamma4 11.048 2.948 3.75
     gamma5 10.183 2.899 3.51
     gamma6 15.262 3.176 4.81
     gamma7 12.221 3.854 3.17
     gamma8 18.507 3.622 5.11
     gamma9 4.621 2.715 1.70
     gamma10 9.236 3.645 2.53
     gamma11 5.104 3.066 1.66
     gamma12 6.284 4.969 1.26
     gamma13 12.375 4.639 2.67
     gamma14 9.683 3.545 2.73
     gamma15 12.668 3.597 3.52
     gamma16 2.371 0.790 3.00
     gamma17 8.116 3.249 2.50
     scale 0.859 0.040 21.47
     Note: All alpha parameters fixed to 1e-3.
    
     [1] -2684.766939
     Model run using rmdcev for R, version 0.9.0
     Estimation method : MLE
     Model type : hybrid specification
     Number of classes : 1
     Number of individuals : 99
     Number of non-numeraire alts : 17
     Estimated parameters : 20
     LL : -2684.76
     AIC : 5409.52
     BIC : 5461.42
     Standard errors calculated using : Delta method
     Exit of MLE : successful convergence
     Time taken (hh:mm:ss) : 00:00:1.21
    
     Average consumption of non-numeraire alternatives:
     1 2 3 4 5 6 7 8 9 10 11 12 13
     6.86 14.03 2.70 9.34 4.85 25.62 6.92 38.30 0.53 1.30 0.61 0.37 3.02
     14 15 16 17
     3.05 10.67 1.55 2.17
    
    
     Psi specification:
     ~
     1
     Parameter estimates --------------------------------
     Estimate Std.err z.stat
     psi_(Intercept) -7.636 0.112 -68.17
     gamma1 6.581 1.579 4.17
     gamma2 12.295 4.028 3.05
     gamma3 4.550 1.250 3.64
     gamma4 11.058 2.951 3.75
     gamma5 10.192 2.901 3.51
     gamma6 15.281 3.180 4.81
     gamma7 12.224 3.854 3.17
     gamma8 18.538 3.627 5.11
     gamma9 4.634 2.723 1.70
     gamma10 9.246 3.648 2.53
     gamma11 5.111 3.070 1.66
     gamma12 6.266 4.953 1.27
     gamma13 12.395 4.646 2.67
     gamma14 9.693 3.548 2.73
     gamma15 12.681 3.601 3.52
     gamma16 2.371 0.789 3.00
     gamma17 8.129 3.253 2.50
     alpha1 0.000 15.203 0.00
     scale 0.859 0.040 21.48
     Note: Alpha parameter is equal for all goods.
    
     Model run using rmdcev for R, version 0.9.0
     Estimation method : MLE
     Model type : hybrid0 specification
     Number of classes : 2
     Number of individuals : 499
     Number of non-numeraire alts : 17
     Estimated parameters : 41
     LL : -12612.59
     AIC : 25307.19
     BIC : 25479.91
     Standard errors calculated using : Delta method
     Exit of MLE : successful convergence
     Time taken (hh:mm:ss) : 00:00:17.14
    
     Average consumption of non-numeraire alternatives:
     1 2 3 4 5 6 7 8 9 10 11 12 13
     6.48 12.29 2.34 9.05 3.85 22.02 4.45 39.60 0.64 1.14 0.84 0.27 4.49
     14 15 16 17
     3.04 9.22 2.37 1.49
    
    
     Psi specification:
     ~
     1
    
     Membership equation:
     ~
     university + ageindex
    
     Class average probabilities:
     class1 class2
     0.71 0.29
     Parameter estimates --------------------------------
     Estimate Std.err z.stat
     class1.psi_(Intercept) -7.835 0.053 -147.84
     class2.psi_(Intercept) -7.483 0.136 -55.02
     class1.gamma1 11.330 1.754 6.46
     class2.gamma1 3.847 0.861 4.47
     class1.gamma2 29.500 5.695 5.18
     class2.gamma2 1.932 0.365 5.29
     class1.gamma3 6.482 1.185 5.47
     class2.gamma3 2.981 0.400 7.45
     class1.gamma4 21.952 5.046 4.35
     class2.gamma4 4.840 0.622 7.78
     class1.gamma5 12.793 3.997 3.20
     class2.gamma5 4.542 1.216 3.74
     class1.gamma6 30.409 12.067 2.52
     class2.gamma6 3.623 1.940 1.87
     class1.gamma7 15.950 3.501 4.56
     class2.gamma7 4.538 1.061 4.28
     class1.gamma8 34.142 5.892 5.79
     class2.gamma8 6.379 1.275 5.00
     class1.gamma9 7.109 2.182 3.26
     class2.gamma9 1.988 0.421 4.72
     class1.gamma10 12.275 3.851 3.19
     class2.gamma10 5.843 1.303 4.48
     class1.gamma11 4.998 1.322 3.78
     class2.gamma11 5.675 1.528 3.71
     class1.gamma12 7.733 2.143 3.61
     class2.gamma12 2.996 0.924 3.24
     class1.gamma13 19.362 4.041 4.79
     class2.gamma13 4.541 1.994 2.28
     class1.gamma14 13.099 4.696 2.79
     class2.gamma14 3.497 2.024 1.73
     class1.gamma15 16.164 8.317 1.94
     class2.gamma15 4.972 1.510 3.29
     class1.gamma16 6.475 1.656 3.91
     class2.gamma16 1.810 0.453 4.00
     class1.gamma17 7.824 2.285 3.42
     class2.gamma17 3.881 1.033 3.76
     class1.scale 0.683 0.029 23.56
     class2.scale 1.039 0.053 19.61
     class2.(Intercept) 1.593 0.545 2.92
     class2.university 0.432 0.395 1.09
     class2.ageindex -2.976 0.616 -4.83
     Note: All alpha parameters fixed to 1e-3.
     Note: The membership equation parameters for class 1 are normalized to 0.
    
     [1] -12612.59445
     "/home/ripley/R/Lib32/rstan/include/exporter.h", line 69: Warning: "typename" must be used within a template.
     "/tmp/RtmpkLayoF/RLIBS_3e7371b5297f/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h", line 49: Error: Cannot define member of undefined specialization "unary_evaluator<CwiseUnaryOp<UnaryOp, ArgType>, Eigen::internal::IteratorBased>".
     "/tmp/RtmpkLayoF/RLIBS_3e7371b5297f/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h", line 99: Error: Cannot define member of undefined specialization "unary_evaluator<CwiseUnaryView<ViewOp, ArgType>, Eigen::internal::IteratorBased>".
     "/tmp/RtmpkLayoF/RLIBS_3e7371b5297f/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h", line 503: Error: Cannot define member of undefined specialization "unary_evaluator<Block<ArgType, BlockRows, BlockCols, InnerPanel>, Eigen::internal::IteratorBased>".
     "/tmp/RtmpkLayoF/RLIBS_3e7371b5297f/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h", line 529: Error: Cannot define member of undefined specialization "unary_evaluator<Block<ArgType, BlockRows, BlockCols, InnerPanel>, Eigen::internal::IteratorBased>".
     "/home/ripley/R/Lib32/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp", line 67: Warning: The template qualifier can only be used within a template.
     "/home/ripley/R/Lib32/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp", line 71: Warning: The template qualifier can only be used within a template.
     "/home/ripley/R/Lib32/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp", line 73: Warning: The template qualifier can only be used within a template.
     4 Error(s) and 4 Warning(s) detected.
     make: Fatal error: Command failed for target `file720e184271ff.o'
     Current working directory /tmp/RtmpkLayoF/working_dir/RtmpA8aWb5/sourceCpp-i386-pc-solaris2.10-1.0.2/sourcecpp_720e69747391
     ── 1. Error: (unknown) (@test-simulations.R#25) ───────────────────────────────
     Error 1 occurred building shared library.
     1: expose_stan_functions(stanmodels$SimulationFunctions) at testthat/test-simulations.R:25
     2: pkgbuild::with_build_tools(suppressWarnings(Rcpp::sourceCpp(code = paste(code, collapse = "\n"),
     ...)), required = rstan_options("required") && identical(Sys.getenv("WINDOWS"),
     "TRUE") && !identical(Sys.getenv("R_PACKAGE_SOURCE"), ""))
     3: suppressWarnings(Rcpp::sourceCpp(code = paste(code, collapse = "\n"), ...))
     4: withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning"))
     5: Rcpp::sourceCpp(code = paste(code, collapse = "\n"), ...)
     6: stop("Error ", status, " occurred building shared library.")
    
     ── 2. Error: (unknown) (@test-simulations.R#25) ───────────────────────────────
     invalid connection
     1: expose_stan_functions(stanmodels$SimulationFunctions) at testthat/test-simulations.R:25
     2: sink(type = "output") at testthat/test-simulations.R:25
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 23 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
     1. Error: (unknown) (@test-simulations.R#25)
     2. Error: (unknown) (@test-simulations.R#25)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86