CRAN Package Check Results for Package stepwise

Last updated on 2019-01-21 05:50:40 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3 3.66 19.90 23.56 OK
r-devel-linux-x86_64-debian-gcc 0.3 2.46 15.86 18.32 ERROR
r-devel-linux-x86_64-fedora-clang 0.3 28.24 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3 27.33 NOTE
r-devel-windows-ix86+x86_64 0.3 13.00 53.00 66.00 OK
r-patched-linux-x86_64 0.3 3.08 18.70 21.78 OK
r-patched-solaris-x86 0.3 42.80 OK
r-release-linux-x86_64 0.3 2.90 18.44 21.34 OK
r-release-windows-ix86+x86_64 0.3 13.00 39.00 52.00 OK
r-release-osx-x86_64 0.3 ERROR
r-oldrel-windows-ix86+x86_64 0.3 13.00 50.00 63.00 OK
r-oldrel-osx-x86_64 0.3 ERROR

Check Details

Version: 0.3
Check: examples
Result: ERROR
    Running examples in ‘stepwise-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: phylpro
    > ### Title: Stepwise detection of recombination breakpoints using Phylpro
    > ### Aliases: phylpro
    > ### Keywords: htest
    >
    > ### ** Examples
    > demo(phylpro)
    
    
     demo(phylpro)
     ---- ~~~~~~~
    
    > inputFile<-system.file("extdata", "simulinfile.txt", package = "stepwise")
    
    > breaks<-c(548, 735, 832)
    
    > WinHalfWidth<-30
    
    > permReps<-10
    
    > b<-phylpro(inputFile, breaks, WinHalfWidth, permReps)
    
    > summary.phylpro(b)
    Error in siteChisqs[1] <- object$corrs[1] : replacement has length zero
    Calls: demo ... source -> withVisible -> eval -> eval -> summary.phylpro
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3
Check: compiled code
Result: NOTE
    File ‘stepwise/libs/stepwise.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3
Check: examples
Result: ERROR
    Running examples in ‘stepwise-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: maxchi
    > ### Title: Stepwise detection of recombination breakpoints using MaxChi
    > ### Aliases: maxchi
    > ### Keywords: htest
    >
    > ### ** Examples
    > demo(maxchi)
    
    
     demo(maxchi)
     ---- ~~~~~~
    
    > inputFile<- system.file("extdata", "simulinfile.txt", package = "stepwise")
    
    > breaks<-c(531,616,810)
    
    > WinHalfWidth<-30
    
    > permReps<-10
    
    > a<-maxchi(inputFile, breaks, WinHalfWidth, permReps)
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64