BioMedR: Generating Various Molecular Representations for Chemicals, Proteins, DNAs, RNAs and Their Interactions

Calculating 293 chemical descriptors and 14 kinds of chemical fingerprints, 9920 protein descriptors based on protein sequences, more than 6000 DNA/RNA descriptors from nucleotide sequences, and six types of interaction descriptors using three different combining strategies.

Version: 1.1.1
Imports: RCurl, rjson, rcdk (≥ 3.3.2), Biostrings, GOSemSim, ChemmineR, fmcsR, pls, randomForest, utils, stats, graphics, methods,
Suggests: RUnit, BiocGenerics
Published: 2019-01-15
Author: Min-feng Zhu, Jie Dong, Dong-sheng Cao
Maintainer: Min-feng Zhu <wind2zhu at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
SystemRequirements: Java JDK 1.8 or higher
Materials: README NEWS
CRAN checks: BioMedR results


Reference manual: BioMedR.pdf
Vignettes: BioMedR: R/CRAN Package for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions
Package source: BioMedR_1.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: not available, r-oldrel: not available


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