CSCDRNA: Covariance Based Single-Cell Decomposition of Bulk Expression Data

Provides accurate cell type proportion estimation by incorporating covariance structure in both single-cell and bulk RNA-seq datasets into the analysis. For more detail, see Karimnezhad, A. (2022) <doi:10.1101/2022.05.13.491858>.

Version: 1.0.3
Depends: R (≥ 4.0)
Imports: nlshrink, limSolve, Biobase, BisqueRNA, methods, plyr, Seurat, MAST
Suggests: testthat (≥ 3.0.0)
Published: 2022-06-24
Author: Ali Karimnezhad [aut, cre, ctb]
Maintainer: Ali Karimnezhad <ali.karimnezhad at gmail.com>
BugReports: https://github.com/empiricalbayes/CSCDRNA/issues
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: CSCDRNA results

Documentation:

Reference manual: CSCDRNA.pdf

Downloads:

Package source: CSCDRNA_1.0.3.tar.gz
Windows binaries: r-devel: CSCDRNA_1.0.2.zip, r-release: CSCDRNA_1.0.2.zip, r-oldrel: CSCDRNA_1.0.2.zip
macOS binaries: r-release (arm64): CSCDRNA_1.0.3.tgz, r-oldrel (arm64): CSCDRNA_1.0.3.tgz, r-release (x86_64): CSCDRNA_1.0.2.tgz, r-oldrel (x86_64): CSCDRNA_1.0.2.tgz
Old sources: CSCDRNA archive

Linking:

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