HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Functions for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS) (10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the in-built 'Shiny' app.

Version: 1.2.2
Depends: R (≥ 3.0)
Imports: data.table, dplyr, DT, ggplot2, gsubfn, latex2exp, reshape2, readr, readxl, shiny, stringr, tidyr
Suggests: spelling, covr, digest, gridExtra, knitr, pander, renv, rmarkdown, shinycssloaders, shinyhelper, shinyjs, testthat, vdiffr
Published: 2021-08-12
Author: Weronika Puchala ORCID iD [cre, aut], Michal Burdukiewicz ORCID iD [aut], Dominik Rafacz ORCID iD [ctb]
Maintainer: Weronika Puchala <puchala.weronika at gmail.com>
License: GPL-3
NeedsCompilation: no
Language: en-US
Materials: README ChangeLog
CRAN checks: HaDeX results

Documentation:

Reference manual: HaDeX.pdf
Vignettes: HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Data processing
Mass calculation
Data aggregation

Downloads:

Package source: HaDeX_1.2.2.tar.gz
Windows binaries: r-devel: HaDeX_1.2.2.zip, r-release: HaDeX_1.2.2.zip, r-oldrel: HaDeX_1.2.2.zip
macOS binaries: r-release (arm64): HaDeX_1.2.2.tgz, r-release (x86_64): HaDeX_1.2.2.tgz, r-oldrel: HaDeX_1.2.2.tgz
Old sources: HaDeX archive

Linking:

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