admixr: An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

Version: 0.9.1
Depends: R (≥ 3.6.0)
Imports: dplyr, magrittr, readr, stringr, tibble, stats, rlang, utils
Suggests: covr, glue, testthat, tidyr, knitr, rmarkdown, tidyverse
Published: 2020-07-03
Author: Martin Petr ORCID iD [aut, cre]
Maintainer: Martin Petr <contact at bodkan.net>
BugReports: https://github.com/bodkan/admixr/issues
License: MIT + file LICENSE
URL: https://github.com/bodkan/admixr
NeedsCompilation: no
SystemRequirements: ADMIXTOOLS suite of command-line utilities for population genetics. See <https://reich.hms.harvard.edu/software> for the most recent installation instructions and further information.
Materials: README NEWS
CRAN checks: admixr results

Documentation:

Reference manual: admixr.pdf
Vignettes: Fitting qpAdm models with a 'rotation' strategy
Tutorial and basic overview of the admixr R package

Downloads:

Package source: admixr_0.9.1.tar.gz
Windows binaries: r-devel: admixr_0.9.1.zip, r-release: admixr_0.9.1.zip, r-oldrel: admixr_0.9.1.zip
macOS binaries: r-release (arm64): admixr_0.9.1.tgz, r-release (x86_64): admixr_0.9.1.tgz, r-oldrel: admixr_0.9.1.tgz

Linking:

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