gkmSVM: Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R <https://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.

Version: 0.83.0
Imports: kernlab, seqinr, utils, ROCR, Rcpp, grDevices, graphics, stats
LinkingTo: Rcpp
Suggests: rtracklayer, GenomicRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors
Published: 2023-08-20
DOI: 10.32614/CRAN.package.gkmSVM
Author: Mahmoud Ghandi
Maintainer: Mike Beer <mbeer at jhu.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: gkmSVM results


Reference manual: gkmSVM.pdf


Package source: gkmSVM_0.83.0.tar.gz
Windows binaries: r-devel: gkmSVM_0.83.0.zip, r-release: gkmSVM_0.83.0.zip, r-oldrel: gkmSVM_0.83.0.zip
macOS binaries: r-release (arm64): gkmSVM_0.83.0.tgz, r-oldrel (arm64): gkmSVM_0.83.0.tgz, r-release (x86_64): gkmSVM_0.83.0.tgz, r-oldrel (x86_64): gkmSVM_0.83.0.tgz
Old sources: gkmSVM archive


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