CRAN Package Check Results for Package CEDARS

Last updated on 2021-07-23 05:51:46 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.90 4.45 37.90 42.35 OK
r-devel-linux-x86_64-debian-gcc 1.90 0.37 1.92 2.29 ERROR
r-devel-linux-x86_64-fedora-clang 1.90 11.68 ERROR
r-devel-linux-x86_64-fedora-gcc 1.90 2.36 ERROR
r-devel-windows-x86_64 1.90 7.00 51.00 58.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.90 NOTE
r-patched-linux-x86_64 1.90 5.09 36.79 41.88 OK
r-patched-solaris-x86 1.90 70.50 ERROR
r-release-linux-x86_64 1.90 3.92 37.48 41.40 OK
r-release-macos-arm64 1.90 NOTE
r-release-macos-x86_64 1.90 NOTE
r-release-windows-ix86+x86_64 1.90 10.00 53.00 63.00 OK
r-oldrel-macos-x86_64 1.90 NOTE
r-oldrel-windows-ix86+x86_64 1.90 11.00 59.00 70.00 OK

Check Details

Version: 1.90
Check: package dependencies
Result: ERROR
    Package required but not available: ‘fastmatch’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.90
Check: data for non-ASCII characters
Result: NOTE
     Note: found 907 marked UTF-8 strings
Flavors: r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.90
Check: examples
Result: ERROR
    Running examples in ‘CEDARS-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: create_project
    > ### Title: Create a New CEDARS Project
    > ### Aliases: create_project
    >
    > ### ** Examples
    >
    > # The code below creates an instance of CEDARS project on a public test MongoDB cluster, populated
    > # with fictitious EHR corpora.
    >
    > # MongoDB credentials
    > db_user_name <- "testUser"
    > db_user_pw <- "testPW"
    > db_host <- "cedars.yvjp6.mongodb.net"
    > db_port <- NA
    >
    > # Using standard MongoDB URL format
    > uri_fun <- mongo_uri_standard
    >
    > # Name for MongoDB database which will contain the CEDARS project
    > # In this case we generate a random name
    > mongo_database <- find_project_name()
    Error: No suitable servers found (`serverSelectionTryOnce` set): [TLS handshake failed: error:14090086:SSL routines:ssl3_get_server_certificate:certificate verify failed calling ismaster on 'cedars-shard-00-00.yvjp6.mongodb.net:27017'] [TLS handshake failed: error:14090086:SSL routines:ssl3_get_server_certificate:certificate verify failed calling ismaster on 'cedars-shard-00-01.yvjp6.mongodb.net:27017'] [TLS handshake failed: error:14090086:SSL routines:ssl3_get_server_certificate:certificate verify faile
    Execution halted
Flavor: r-patched-solaris-x86