CRAN Package Check Results for Package NMF

Last updated on 2021-09-25 05:49:44 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.23.0 32.36 665.86 698.22 OK
r-devel-linux-x86_64-debian-gcc 0.23.0 24.96 508.21 533.17 OK
r-devel-linux-x86_64-fedora-clang 0.23.0 533.34 WARN
r-devel-linux-x86_64-fedora-gcc 0.23.0 804.61 NOTE
r-devel-windows-x86_64 0.23.0 36.00 518.00 554.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.23.0 NOTE
r-patched-linux-x86_64 0.23.0 36.69 662.23 698.92 OK
r-patched-solaris-x86 0.23.0 306.80 ERROR --no-vignettes
r-release-linux-x86_64 0.23.0 30.06 662.60 692.66 OK
r-release-macos-arm64 0.23.0 NOTE
r-release-macos-x86_64 0.23.0 NOTE
r-release-windows-ix86+x86_64 0.23.0 63.00 791.00 854.00 OK
r-oldrel-macos-x86_64 0.23.0 NOTE
r-oldrel-windows-ix86+x86_64 0.23.0 48.00 608.00 656.00 OK

Check Details

Version: 0.23.0
Check: package dependencies
Result: NOTE
    Suggests orphaned package: ‘bibtex’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.23.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.23.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘NMF-vignette.Rnw’ using knitr
    Quitting from lines 951-954 (NMF-vignette.Rnw)
    Error: processing vignette 'NMF-vignette.Rnw' failed with diagnostics:
    unable to find an inherited method for function 'consensusmap' for signature '"logical"'
    --- failed re-building ‘NMF-vignette.Rnw’
    
    --- re-building ‘heatmaps.Rnw’ using knitr
    Quitting from lines 430-431 (heatmaps.Rnw)
    Error: processing vignette 'heatmaps.Rnw' failed with diagnostics:
    unable to find an inherited method for function 'consensusmap' for signature '"logical"'
    --- failed re-building ‘heatmaps.Rnw’
    
    SUMMARY: processing the following files failed:
     ‘NMF-vignette.Rnw’ ‘heatmaps.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.23.0
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavor: r-patched-solaris-x86

Version: 0.23.0
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in ‘NMF-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: NMFfitX-class
    > ### Title: Virtual Class to Handle Results from Multiple Runs of NMF
    > ### Algorithms
    > ### Aliases: NMFfitX-class
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # generate a synthetic dataset with known classes
    > n <- 20; counts <- c(5, 2, 3);
    > V <- syntheticNMF(n, counts)
    >
    > # perform multiple runs of one algorithm (default is to keep only best fit)
    > res <- nmf(V, 3, nrun=3)
    # NOTE - CRAN check detected: limiting maximum number of cores [2/16]
    Error in big.matrix(nrow = nrow(x), ncol = ncol(x), type = type, init = NULL, :
     Error: memory could not be allocated for instance of type big.matrix
    Calls: nmf ... gVariable -> <Anonymous> -> <Anonymous> -> big.matrix
    Timing stopped at: 0.031 0.04 0.072
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.23.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘doMPI’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64