CRAN Package Check Results for Package beadarrayFilter

Last updated on 2021-12-06 05:53:03 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 21.74 191.76 213.50 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.0 19.35 148.16 167.51 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.0 262.54 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 246.11 NOTE
r-devel-windows-x86_64-new-UL 1.1.0 10.00 7.00 17.00 ERROR
r-devel-windows-x86_64-new-TK 1.1.0 NOTE
r-devel-windows-x86_64-old 1.1.0 34.00 147.00 181.00 NOTE
r-patched-linux-x86_64 1.1.0 21.39 170.42 191.81 NOTE
r-release-linux-x86_64 1.1.0 19.75 181.69 201.44 NOTE
r-release-macos-arm64 1.1.0 NOTE
r-release-macos-x86_64 1.1.0 ERROR
r-release-windows-ix86+x86_64 1.1.0 3.00 6.00 9.00 ERROR
r-oldrel-macos-x86_64 1.1.0 ERROR
r-oldrel-windows-ix86+x86_64 1.1.0 37.00 184.00 221.00 NOTE

Check Details

Version: 1.1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'RColorBrewer' 'beadarray'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: R code for possible problems
Result: NOTE
    beadtypeFilter: no visible global function definition for 'na.omit'
    beadtypeFilter: no visible global function definition for 'exprs'
    beadtypeFilter: no visible global function definition for 'se.exprs'
    beadtypeFilter: no visible global function definition for 'beadNum'
    beadtypeFilter: no visible global function definition for 'fData'
    emCDF: no visible global function definition for 'brewer.pal'
    emCDF: no visible global function definition for 'ecdf'
    emCDF: no visible global function definition for 'legend'
    emCDF: no visible global function definition for 'lines'
    emCDF: no visible global function definition for 'text'
    emCDF: no visible global function definition for 'reshape'
    iccFun : <anonymous>: no visible global function definition for
     'quantile'
    varianceplot: no visible global function definition for 'reshape'
    varianceplot: no visible global function definition for 'points'
    varianceplot: no visible global function definition for 'legend'
    Undefined global functions or variables:
     beadNum brewer.pal ecdf exprs fData legend lines na.omit points
     quantile reshape se.exprs text
    Consider adding
     importFrom("graphics", "legend", "lines", "points", "text")
     importFrom("stats", "ecdf", "na.omit", "quantile", "reshape")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: Rd line widths
Result: NOTE
    Rd file 'iccFun.Rd':
     \examples lines wider than 100 characters:
     aaa<-na.omit(data.frame(I(rownames(exprs(exampleSummaryDataNorm))),exprs(exampleSummaryDataNorm)))[1:40,]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-devel-windows-x86_64-new-UL, r-release-windows-ix86+x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'beadarrayExampleData', 'lumi'
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘beadarrayFilter-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: MLM.beadarray
    > ### Title: Multi-level Mixed model
    > ### Aliases: MLM.beadarray
    > ### Keywords: differential expression
    >
    > ### ** Examples
    >
    > require(beadarrayExampleData)
    Loading required package: beadarrayExampleData
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘beadarrayExampleData’
    > data(exampleSummaryData)
    Warning in data(exampleSummaryData) :
     data set ‘exampleSummaryData’ not found
    > exampleSummaryDatalog2 <- channel(exampleSummaryData, "G")[1:40,]
    Error in h(simpleError(msg, call)) :
     error in evaluating the argument 'object' in selecting a method for function 'channel': object 'exampleSummaryData' not found
    Calls: channel -> .handleSimpleError -> h
    Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64