CRAN Package Check Results for Package data.table

Last updated on 2020-06-01 05:48:10 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.12.8 39.07 545.44 584.51 ERROR
r-devel-linux-x86_64-debian-gcc 1.12.8 30.29 739.70 769.99 ERROR
r-devel-linux-x86_64-fedora-clang 1.12.8 502.82 ERROR
r-devel-linux-x86_64-fedora-gcc 1.12.8 493.29 ERROR
r-devel-windows-ix86+x86_64 1.12.8 131.00 885.00 1016.00 ERROR
r-patched-linux-x86_64 1.12.8 33.97 610.70 644.67 ERROR
r-patched-solaris-x86 1.12.8 441.40 ERROR
r-release-linux-x86_64 1.12.8 35.19 631.39 666.58 OK
r-release-osx-x86_64 1.12.8 ERROR
r-release-windows-ix86+x86_64 1.12.8 100.00 810.00 910.00 OK
r-oldrel-osx-x86_64 1.12.8 OK
r-oldrel-windows-ix86+x86_64 1.12.8 257.00 670.00 927.00 OK

Additional issues

clang-UBSAN

Check Details

Version: 1.12.8
Check: tests
Result: ERROR
     Running 'autoprint.R' [1s/1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [88s/38s]
     Running 'knitr.R' [1s/1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [314s/144s]
     Running 'nafill.R' [3s/3s]
     Running 'other.R' [0s/1s]
     Running 'types.R' [1s/1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     S3 method lookup found 'as.Date.IDate' on search path
     S3 method lookup found 'as.Date.IDate' on search path
    
     10 longest running tests took 63s (44% of 142s)
     ID time nTest
     1: 1650 9.298 91
     2: 1438 9.232 738
     3: 1648 9.215 91
     4: 1652 8.022 91
     5: 1888 6.133 9
     6: 1848 5.074 1
     7: 1912 4.754 2
     8: 1642 4.557 91
     9: 1644 3.821 91
     10: 1646 3.552 91
    
     Error in test.data.table() :
     3 errors out of 8152 in 00:02:23 elapsed (00:04:54 cpu) on Sun May 31 22:46:11 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=C;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5.
     In addition: Warning messages:
     1: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
     invalid input found on input connection '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2'
     2: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
     invalid input found on input connection '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2'
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [44s/69s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [568s/563s]
     Running ‘nafill.R’ [3s/4s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [0s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 267s (47% of 561s)
     ID time nTest
     1: 1438 58.860 738
     2: 1650 35.205 91
     3: 1652 32.234 91
     4: 1912 28.404 2
     5: 1648 27.265 91
     6: 1252 19.914 484
     7: 1646 18.852 91
     8: 1644 17.671 91
     9: 1639 15.464 143
     10: 1223 13.745 728
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:09:22 elapsed (00:09:22 cpu) on Sun May 31 20:40:58 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [61s/42s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [232s/159s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 66s (42% of 157s)
     ID time nTest
     1: 1648 10.233 91
     2: 1438 10.155 738
     3: 1652 7.862 91
     4: 1650 7.584 91
     5: 1646 5.529 91
     6: 1888 5.474 9
     7: 1848 5.209 1
     8: 1223 5.100 728
     9: 1642 4.872 91
     10: 1644 4.528 91
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:02:38 elapsed (00:03:40 cpu) on Sat May 30 17:43:17 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/London, locale='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [43s/57s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [239s/239s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 107s (45% of 237s)
     ID time nTest
     1: 1438 16.319 738
     2: 1650 14.490 91
     3: 1648 14.399 91
     4: 1652 13.703 91
     5: 1642 9.932 91
     6: 1646 9.609 91
     7: 1644 9.197 91
     8: 1912 7.635 2
     9: 1888 6.189 9
     10: 1223 6.054 728
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:03:57 elapsed (00:03:55 cpu) on Sun May 24 17:41:46 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/London, locale='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.12.8
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [29s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [298s]
     Running 'nafill.R' [2s]
     Running 'other.R' [1s]
     Running 'types.R' [1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpgR7tZ9/RLIBS_248d44cd61485/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1590.04 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 2 3 4
     > y = INT(1, 4, 2, 3)
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     Mean relative difference: 0.4444444
     Test 1590.07 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     > y = INT(2, 3, 1, 4)
     First 4 of 4 (type 'integer'):
     [1] 2 3 1 4
     Mean relative difference: 0.4
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 101s (34% of 296s)
     ID time nTest
     1: 2028 11.58 2
     2: 1658 10.92 61
     3: 1909 10.61 6
     4: 1555 10.57 13
     5: 900 10.50 2
     6: 1869 10.42 7
     7: 1449 10.25 2
     8: 901 10.20 2
     9: 1621 9.92 2
     10: 2032 6.44 22
    
     Error in test.data.table() :
     7 errors out of 8276 in 00:04:56 elapsed (00:01:51 cpu) on Thu May 28 01:24:14 2020. [endian==little, sizeof(long double)==12, sizeof(pointer)==4, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1590.04, 1590.07, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.12.8
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [34s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [324s]
     Running 'nafill.R' [2s]
     Running 'other.R' [1s]
     Running 'types.R' [1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpgR7tZ9/RLIBS_248d44cd61485/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1590.04 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 2 3 4
     > y = INT(1, 4, 2, 3)
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     Mean relative difference: 0.4444444
     Test 1590.07 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     > y = INT(2, 3, 1, 4)
     First 4 of 4 (type 'integer'):
     [1] 2 3 1 4
     Mean relative difference: 0.4
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 95s (29% of 323s)
     ID time nTest
     1: 901 11.31 2
     2: 900 11.06 2
     3: 1621 9.71 2
     4: 1658 9.57 61
     5: 1449 9.56 2
     6: 2028 9.46 2
     7: 1555 9.13 13
     8: 1869 8.80 7
     9: 1909 8.68 6
     10: 1438 8.65 738
    
     Error in test.data.table() :
     7 errors out of 9652 in 00:05:23 elapsed (00:02:16 cpu) on Thu May 28 01:30:21 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1590.04, 1590.07, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [52s/64s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [424s/349s]
     Running ‘nafill.R’ [2s/2s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 168s (48% of 347s)
     ID time nTest
     1: 1650 28.799 91
     2: 1652 26.824 91
     3: 1438 25.065 738
     4: 1648 21.118 91
     5: 1644 17.543 91
     6: 1912 11.657 2
     7: 1646 11.598 91
     8: 1642 8.809 91
     9: 1252 8.509 484
     10: 1223 8.398 728
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:05:48 elapsed (00:06:57 cpu) on Fri May 29 14:34:18 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [40s/46s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [57s/75s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1658.421 produced 1 errors but expected 0
     Expected:
     Observed: zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.
     Output captured before unexpected warning/error/message:
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     No list columns are present. Setting sep2='' otherwise quote='auto' would quote fields containing sep2.
     Column writers: 3 3
     args.doRowNames=0 args.rowNames=0 doQuote=-128 args.nrow=200 args.ncol=2 eolLen=1
     maxLineLen=51. Found in 0.000s
     Writing bom (false), yaml (0 characters) and column names (true) ... deflate input stream: e86cb60 39 e613258 4
     deflate returned 1 with stream->total_out==24; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     done in 0.000s
     Writing 200 rows in 1 batches of 200 rows (each buffer size 8MB, showProgress=0, nth=1)
     deflate input stream: f7e5728 8391193 efe5720 800
     deflate returned -2 with stream->total_out==0; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     <simpleError in fwrite(DT, file = f1 <- tempfile(fileext = ".gz"), verbose = TRUE): zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.>
     Test 1658.43 ran without errors but failed check that x equals y:
     > x = fread(f1)
     Empty data.table (0 rows and 2 cols): a,b
     [Key= Types=log,log Classes=log,log]
     > y = DT
     a b [Key= Types=int,int Classes=int,int]
     1: 1 1
     2: 1 1
     ---
     199: 2 4
     200: 2 4
     Different number of rows
     Error in fwrite(DT, file = f3 <- tempfile(), compress = "gzip") :
     zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please retry fwrite() with verbose=TRUE and include the full output with your data.table bug report.
     Error in test.data.table() :
     Failed after test 1658.43 before the next test() call in /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [13s/20s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [71s/114s]
    Running the tests in ‘tests/main.R’ failed.
    Last 13 lines of output:
     ID time nTest
     1: 1874 11.042 5
     2: 1888 7.667 9
     3: 1438 5.275 738
     4: 1875 4.294 1
     5: 1648 4.181 91
     6: 1650 4.089 91
     7: 1848 3.928 1
     8: 1652 3.828 91
     9: 1642 2.857 91
     10: 1437 2.630 36
    
     Error in test.data.table() :
     5 errors out of 9661 in 00:01:53 elapsed (51.0s cpu) on Mon May 18 02:11:51 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=America/New_York, locale='C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='This installation of data.table has not been compiled with OpenMP support.; omp_get_num_procs()==1; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==1; omp_get_max_threads()==1; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 1 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.12.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘datatable-benchmarking.Rmd’ using rmarkdown
    --- finished re-building ‘datatable-benchmarking.Rmd’
    
    --- re-building ‘datatable-faq.Rmd’ using rmarkdown
    --- finished re-building ‘datatable-faq.Rmd’
    
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    --- re-building ‘datatable-reference-semantics.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-reference-semantics.Rmd’
    
    --- re-building ‘datatable-reshape.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-reshape.Rmd’
    
    --- re-building ‘datatable-sd-usage.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-sd-usage.Rmd’
    
    --- re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’
    
    rm -rf *.tex *.bbl *.blg *.aux *.out *.toc *.log *.spl *tikzDictionary *.md figure/
    rm -rf *.tex *.bbl *.blg *.aux *.out *.toc *.log *.spl *tikzDictionary *.md figure/
    SUMMARY: processing the following files failed:
     ‘datatable-importing.Rmd’ ‘datatable-intro.Rmd’
     ‘datatable-keys-fast-subset.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64