Last updated on 2024-09-08 06:50:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2024.7.7 | 4.18 | 180.44 | 184.62 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2024.7.7 | 3.34 | 170.43 | 173.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2024.7.7 | 400.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2024.7.7 | 407.40 | OK | |||
| r-devel-windows-x86_64 | 2024.7.7 | 6.00 | 179.00 | 185.00 | ERROR | |
| r-patched-linux-x86_64 | 2024.7.7 | 4.75 | 226.40 | 231.15 | OK | |
| r-release-linux-x86_64 | 2024.7.7 | 4.35 | 224.83 | 229.18 | OK | |
| r-release-macos-arm64 | 2024.7.7 | 135.00 | OK | |||
| r-release-macos-x86_64 | 2024.7.7 | 277.00 | OK | |||
| r-release-windows-x86_64 | 2024.7.7 | 5.00 | 218.00 | 223.00 | OK | |
| r-oldrel-macos-arm64 | 2024.7.7 | 171.00 | OK | |||
| r-oldrel-macos-x86_64 | 2024.7.7 | 366.00 | OK | |||
| r-oldrel-windows-x86_64 | 2024.7.7 | 7.00 | 300.00 | 307.00 | OK |
Version: 2024.7.7
Check: examples
Result: ERROR
Running examples in ‘mlr3resampling-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: score
> ### Title: Score benchmark results
> ### Aliases: score
>
> ### ** Examples
>
>
> N <- 100
> library(data.table)
> set.seed(1)
> reg.dt <- data.table(
+ x=runif(N, -2, 2),
+ person=rep(1:2, each=0.5*N))
> reg.pattern.list <- list(
+ easy=function(x, person)x^2,
+ impossible=function(x, person)(x^2+person*3)*(-1)^person)
> reg.task.list <- list()
> for(pattern in names(reg.pattern.list)){
+ f <- reg.pattern.list[[pattern]]
+ yname <- paste0("y_",pattern)
+ reg.dt[, (yname) := f(x,person)+rnorm(N, sd=0.5)][]
+ task.dt <- reg.dt[, c("x","person",yname), with=FALSE]
+ task.obj <- mlr3::TaskRegr$new(
+ pattern, task.dt, target=yname)
+ task.obj$col_roles$stratum <- "person"
+ task.obj$col_roles$subset <- "person"
+ reg.task.list[[pattern]] <- task.obj
+ }
> same_other <- mlr3resampling::ResamplingSameOtherSizesCV$new()
> reg.learner.list <- list(
+ mlr3::LearnerRegrFeatureless$new())
> if(requireNamespace("rpart")){
+ reg.learner.list$rpart <- mlr3::LearnerRegrRpart$new()
+ }
Loading required namespace: rpart
> (bench.grid <- mlr3::benchmark_grid(
+ reg.task.list,
+ reg.learner.list,
+ same_other))
task learner resampling
<char> <char> <char>
1: easy regr.featureless same_other_sizes_cv
2: easy regr.rpart same_other_sizes_cv
3: impossible regr.featureless same_other_sizes_cv
4: impossible regr.rpart same_other_sizes_cv
> bench.result <- mlr3::benchmark(bench.grid)
INFO [01:20:17.472] [mlr3] Running benchmark with 72 resampling iterations
INFO [01:20:17.672] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 1/18)
INFO [01:20:17.730] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 2/18)
INFO [01:20:17.754] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 3/18)
INFO [01:20:17.771] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 4/18)
INFO [01:20:17.788] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 5/18)
INFO [01:20:17.806] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 6/18)
INFO [01:20:17.832] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 7/18)
INFO [01:20:17.866] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 8/18)
INFO [01:20:17.900] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 9/18)
INFO [01:20:17.935] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 10/18)
INFO [01:20:17.973] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 11/18)
INFO [01:20:18.012] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 12/18)
INFO [01:20:18.045] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 13/18)
INFO [01:20:18.075] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 14/18)
INFO [01:20:18.121] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 15/18)
INFO [01:20:18.159] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 16/18)
INFO [01:20:18.193] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 17/18)
INFO [01:20:18.232] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 18/18)
INFO [01:20:18.266] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 1/18)
INFO [01:20:18.314] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 2/18)
INFO [01:20:18.337] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 3/18)
INFO [01:20:18.361] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 4/18)
INFO [01:20:18.386] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 5/18)
INFO [01:20:18.410] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 6/18)
INFO [01:20:18.439] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 7/18)
INFO [01:20:18.463] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 8/18)
INFO [01:20:18.491] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 9/18)
INFO [01:20:18.515] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 10/18)
INFO [01:20:18.539] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 11/18)
INFO [01:20:18.564] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 12/18)
INFO [01:20:18.588] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 13/18)
INFO [01:20:18.612] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 14/18)
INFO [01:20:18.636] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 15/18)
INFO [01:20:18.665] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 16/18)
INFO [01:20:18.697] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 17/18)
INFO [01:20:18.747] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 18/18)
INFO [01:20:18.802] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 1/18)
INFO [01:20:18.840] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 2/18)
INFO [01:20:18.892] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 3/18)
INFO [01:20:18.929] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 4/18)
INFO [01:20:18.967] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 5/18)
INFO [01:20:19.001] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 6/18)
INFO [01:20:19.039] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 7/18)
INFO [01:20:19.084] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 8/18)
INFO [01:20:19.127] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 9/18)
INFO [01:20:19.152] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 10/18)
INFO [01:20:19.169] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 11/18)
INFO [01:20:19.186] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 12/18)
INFO [01:20:19.203] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 13/18)
INFO [01:20:19.219] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 14/18)
INFO [01:20:19.236] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 15/18)
INFO [01:20:19.253] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 16/18)
INFO [01:20:19.287] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 17/18)
INFO [01:20:19.322] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 18/18)
INFO [01:20:19.339] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 1/18)
INFO [01:20:19.363] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 2/18)
INFO [01:20:19.391] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 3/18)
INFO [01:20:19.414] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 4/18)
INFO [01:20:19.437] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 5/18)
INFO [01:20:19.460] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 6/18)
INFO [01:20:19.483] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 7/18)
INFO [01:20:19.505] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 8/18)
INFO [01:20:19.529] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 9/18)
INFO [01:20:19.552] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 10/18)
INFO [01:20:19.580] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 11/18)
INFO [01:20:19.603] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 12/18)
INFO [01:20:19.643] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 13/18)
INFO [01:20:19.692] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 14/18)
INFO [01:20:19.744] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 15/18)
INFO [01:20:19.792] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 16/18)
INFO [01:20:19.840] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 17/18)
INFO [01:20:19.872] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 18/18)
INFO [01:20:19.938] [mlr3] Finished benchmark
> bench.score <- mlr3resampling::score(bench.result)
> if(require(animint2)){
+ ggplot()+
+ geom_point(aes(
+ regr.mse, train.subsets, color=algorithm),
+ shape=1,
+ data=bench.score)+
+ facet_grid(
+ test.subset ~ task_id,
+ labeller=label_both,
+ scales="free")+
+ scale_x_log10()
+ }
Loading required package: animint2
Error: Cannot create zero-length unit vector ("unit" subsetting)
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2024.7.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Newer_resamplers.Rmd’ using knitr
** Processing: figure/simulationScatter-1.png
432x432 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4572 bytes
Input file size = 5424 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4060
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4060
Output IDAT size = 4060 bytes (512 bytes decrease)
Output file size = 4138 bytes (1286 bytes = 23.71% decrease)
** Processing: figure/SameOtherCV-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20858 bytes
Input file size = 20960 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17280
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17280
Output IDAT size = 17280 bytes (3578 bytes decrease)
Output file size = 17358 bytes (3602 bytes = 17.19% decrease)
** Processing: figure/SameOtherCV-2.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19147 bytes
Input file size = 19249 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15678
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15678
Output IDAT size = 15678 bytes (3469 bytes decrease)
Output file size = 15756 bytes (3493 bytes = 18.15% decrease)
** Processing: figure/unnamed-chunk-4-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41886 bytes
Input file size = 42024 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32829
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32829
Output IDAT size = 32829 bytes (9057 bytes decrease)
Output file size = 32907 bytes (9117 bytes = 21.69% decrease)
** Processing: figure/unnamed-chunk-7-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32619 bytes
Input file size = 32733 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26435
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26435
Output IDAT size = 26435 bytes (6184 bytes decrease)
Output file size = 26513 bytes (6220 bytes = 19.00% decrease)
** Processing: figure/simulationShort-1.png
432x432 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10245 bytes
Input file size = 11115 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9608
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9605
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9605
Output IDAT size = 9605 bytes (640 bytes decrease)
Output file size = 9683 bytes (1432 bytes = 12.88% decrease)
** Processing: figure/unnamed-chunk-9-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14774 bytes
Input file size = 14864 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12217
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12217
Output IDAT size = 12217 bytes (2557 bytes decrease)
Output file size = 12295 bytes (2569 bytes = 17.28% decrease)
** Processing: figure/unnamed-chunk-10-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22752 bytes
Input file size = 22854 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17953
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17953
Output IDAT size = 17953 bytes (4799 bytes decrease)
Output file size = 18031 bytes (4823 bytes = 21.10% decrease)
** Processing: figure/unnamed-chunk-10-2.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22696 bytes
Input file size = 22798 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18065
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18065
Output IDAT size = 18065 bytes (4631 bytes decrease)
Output file size = 18143 bytes (4655 bytes = 20.42% decrease)
** Processing: figure/unnamed-chunk-11-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40850 bytes
Input file size = 40976 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31873
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31873
Output IDAT size = 31873 bytes (8977 bytes decrease)
Output file size = 31951 bytes (9025 bytes = 22.03% decrease)
** Processing: figure/unnamed-chunk-11-2.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31231 bytes
Input file size = 31345 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23396
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23396
Output IDAT size = 23396 bytes (7835 bytes decrease)
Output file size = 23474 bytes (7871 bytes = 25.11% decrease)
** Processing: figure/unnamed-chunk-18-1.png
432x432 pixels, 8 bits/pixel, 235 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8613 bytes
Input file size = 9420 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7733
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7733
Output IDAT size = 7733 bytes (880 bytes decrease)
Output file size = 7811 bytes (1609 bytes = 17.08% decrease)
** Processing: figure/unnamed-chunk-20-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18282 bytes
Input file size = 18384 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13946
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13946
Output IDAT size = 13946 bytes (4336 bytes decrease)
Output file size = 14024 bytes (4360 bytes = 23.72% decrease)
** Processing: figure/unnamed-chunk-21-1.png
432x432 pixels, 8 bits/pixel, 244 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5907 bytes
Input file size = 6729 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4972
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4972
Output IDAT size = 4972 bytes (935 bytes decrease)
Output file size = 5050 bytes (1679 bytes = 24.95% decrease)
** Processing: figure/unnamed-chunk-22-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21995 bytes
Input file size = 22097 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17440
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17440
Output IDAT size = 17440 bytes (4555 bytes decrease)
Output file size = 17518 bytes (4579 bytes = 20.72% decrease)
** Processing: figure/unnamed-chunk-28-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25438 bytes
Input file size = 25552 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18836
Output IDAT size = 18836 bytes (6602 bytes decrease)
Output file size = 18914 bytes (6638 bytes = 25.98% decrease)
** Processing: figure/unnamed-chunk-29-1.png
432x432 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28911 bytes
Input file size = 29025 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21212
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21212
Output IDAT size = 21212 bytes (7699 bytes decrease)
Output file size = 21290 bytes (7735 bytes = 26.65% decrease)
--- finished re-building ‘Newer_resamplers.Rmd’
--- re-building ‘Older_resamplers.Rmd’ using knitr
Quitting from lines 105-118 [unnamed-chunk-3] (Older_resamplers.Rmd)
Error: processing vignette 'Older_resamplers.Rmd' failed with diagnostics:
Cannot create zero-length unit vector ("unit" subsetting)
--- failed re-building ‘Older_resamplers.Rmd’
SUMMARY: processing the following file failed:
‘Older_resamplers.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2024.7.7
Check: examples
Result: ERROR
Running examples in 'mlr3resampling-Ex.R' failed
The error most likely occurred in:
> ### Name: score
> ### Title: Score benchmark results
> ### Aliases: score
>
> ### ** Examples
>
>
> N <- 100
> library(data.table)
> set.seed(1)
> reg.dt <- data.table(
+ x=runif(N, -2, 2),
+ person=rep(1:2, each=0.5*N))
> reg.pattern.list <- list(
+ easy=function(x, person)x^2,
+ impossible=function(x, person)(x^2+person*3)*(-1)^person)
> reg.task.list <- list()
> for(pattern in names(reg.pattern.list)){
+ f <- reg.pattern.list[[pattern]]
+ yname <- paste0("y_",pattern)
+ reg.dt[, (yname) := f(x,person)+rnorm(N, sd=0.5)][]
+ task.dt <- reg.dt[, c("x","person",yname), with=FALSE]
+ task.obj <- mlr3::TaskRegr$new(
+ pattern, task.dt, target=yname)
+ task.obj$col_roles$stratum <- "person"
+ task.obj$col_roles$subset <- "person"
+ reg.task.list[[pattern]] <- task.obj
+ }
> same_other <- mlr3resampling::ResamplingSameOtherSizesCV$new()
> reg.learner.list <- list(
+ mlr3::LearnerRegrFeatureless$new())
> if(requireNamespace("rpart")){
+ reg.learner.list$rpart <- mlr3::LearnerRegrRpart$new()
+ }
Loading required namespace: rpart
> (bench.grid <- mlr3::benchmark_grid(
+ reg.task.list,
+ reg.learner.list,
+ same_other))
task learner resampling
<char> <char> <char>
1: easy regr.featureless same_other_sizes_cv
2: easy regr.rpart same_other_sizes_cv
3: impossible regr.featureless same_other_sizes_cv
4: impossible regr.rpart same_other_sizes_cv
> bench.result <- mlr3::benchmark(bench.grid)
INFO [11:44:51.942] [mlr3] Running benchmark with 72 resampling iterations
INFO [11:44:52.070] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 1/18)
INFO [11:44:52.106] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 2/18)
INFO [11:44:52.121] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 3/18)
INFO [11:44:52.136] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 4/18)
INFO [11:44:52.150] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 5/18)
INFO [11:44:52.164] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 6/18)
INFO [11:44:52.180] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 7/18)
INFO [11:44:52.190] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 8/18)
INFO [11:44:52.199] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 9/18)
INFO [11:44:52.214] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 10/18)
INFO [11:44:52.227] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 11/18)
INFO [11:44:52.238] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 12/18)
INFO [11:44:52.248] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 13/18)
INFO [11:44:52.258] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 14/18)
INFO [11:44:52.269] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 15/18)
INFO [11:44:52.283] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 16/18)
INFO [11:44:52.298] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 17/18)
INFO [11:44:52.313] [mlr3] Applying learner 'regr.featureless' on task 'easy' (iter 18/18)
INFO [11:44:52.332] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 1/18)
INFO [11:44:52.356] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 2/18)
INFO [11:44:52.371] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 3/18)
INFO [11:44:52.386] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 4/18)
INFO [11:44:52.407] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 5/18)
INFO [11:44:52.427] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 6/18)
INFO [11:44:52.452] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 7/18)
INFO [11:44:52.472] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 8/18)
INFO [11:44:52.493] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 9/18)
INFO [11:44:52.515] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 10/18)
INFO [11:44:52.536] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 11/18)
INFO [11:44:52.556] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 12/18)
INFO [11:44:52.582] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 13/18)
INFO [11:44:52.602] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 14/18)
INFO [11:44:52.619] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 15/18)
INFO [11:44:52.638] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 16/18)
INFO [11:44:52.655] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 17/18)
INFO [11:44:52.668] [mlr3] Applying learner 'regr.rpart' on task 'easy' (iter 18/18)
INFO [11:44:52.685] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 1/18)
INFO [11:44:52.698] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 2/18)
INFO [11:44:52.710] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 3/18)
INFO [11:44:52.723] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 4/18)
INFO [11:44:52.740] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 5/18)
INFO [11:44:52.756] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 6/18)
INFO [11:44:52.771] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 7/18)
INFO [11:44:52.786] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 8/18)
INFO [11:44:52.808] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 9/18)
INFO [11:44:52.825] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 10/18)
INFO [11:44:52.841] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 11/18)
INFO [11:44:52.858] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 12/18)
INFO [11:44:52.873] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 13/18)
INFO [11:44:52.887] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 14/18)
INFO [11:44:52.907] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 15/18)
INFO [11:44:52.923] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 16/18)
INFO [11:44:52.939] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 17/18)
INFO [11:44:52.961] [mlr3] Applying learner 'regr.featureless' on task 'impossible' (iter 18/18)
INFO [11:44:52.978] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 1/18)
INFO [11:44:52.998] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 2/18)
INFO [11:44:53.020] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 3/18)
INFO [11:44:53.041] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 4/18)
INFO [11:44:53.062] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 5/18)
INFO [11:44:53.089] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 6/18)
INFO [11:44:53.106] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 7/18)
INFO [11:44:53.122] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 8/18)
INFO [11:44:53.143] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 9/18)
INFO [11:44:53.164] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 10/18)
INFO [11:44:53.186] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 11/18)
INFO [11:44:53.212] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 12/18)
INFO [11:44:53.235] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 13/18)
INFO [11:44:53.257] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 14/18)
INFO [11:44:53.279] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 15/18)
INFO [11:44:53.302] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 16/18)
INFO [11:44:53.324] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 17/18)
INFO [11:44:53.350] [mlr3] Applying learner 'regr.rpart' on task 'impossible' (iter 18/18)
INFO [11:44:53.402] [mlr3] Finished benchmark
> bench.score <- mlr3resampling::score(bench.result)
> if(require(animint2)){
+ ggplot()+
+ geom_point(aes(
+ regr.mse, train.subsets, color=algorithm),
+ shape=1,
+ data=bench.score)+
+ facet_grid(
+ test.subset ~ task_id,
+ labeller=label_both,
+ scales="free")+
+ scale_x_log10()
+ }
Loading required package: animint2
Error: Cannot create zero-length unit vector ("unit" subsetting)
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2024.7.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Newer_resamplers.Rmd' using knitr
--- finished re-building 'Newer_resamplers.Rmd'
--- re-building 'Older_resamplers.Rmd' using knitr
Quitting from lines 105-118 [unnamed-chunk-3] (Older_resamplers.Rmd)
Error: processing vignette 'Older_resamplers.Rmd' failed with diagnostics:
Cannot create zero-length unit vector ("unit" subsetting)
--- failed re-building 'Older_resamplers.Rmd'
SUMMARY: processing the following file failed:
'Older_resamplers.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64