CRAN Package Check Results for Package pcalg

Last updated on 2021-01-15 05:48:59 CET.

Check Details

Version: 2.7-1
Check: installed package size
Result: NOTE
     installed size is 12.5Mb
     sub-directories of 1Mb or more:
     data 2.1Mb
     libs 7.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64

Version: 2.7-1
Check: Rd cross-references
Result: NOTE
    Undeclared packages ‘combinat’, ‘unifDAG’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.7-1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘pcalgDoc.Rnw’ using Sweave
    Loading required package: Rgraphviz
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: ‘BiocGenerics’
    
    The following objects are masked from ‘package:parallel’:
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from ‘package:stats’:
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from ‘package:base’:
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect,
     is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
     pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
    Loading required package: grid
    The input graph is not a valid cpdag. See function isValidGraph() for details.
    
    No need to specify 'p', when 'labels' is given
    Error: processing vignette 'pcalgDoc.Rnw' failed with diagnostics:
    Running ‘texi2dvi’ on ‘pcalgDoc.tex’ failed.
    LaTeX errors:
    ! Undefined control sequence.
    <recently read> \Hy@colorlink
    
    l.115 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.115 \begin{document}
    
    ! Undefined control sequence.
    <recently read> \Hy@colorlink
    
    l.115 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.115 \begin{document}
    
    ! Undefined control sequence.
    <recently read> \Hy@colorlink
    
    l.115 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.115 \begin{document}
    
    ! Undefined control sequence.
    <recently read> \Hy@colorlink
    
    l.115 \begin{document}
    
    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink
    l.115 \begin{document}
    
    --- failed re-building ‘pcalgDoc.Rnw’
    
    --- re-building ‘vignette2018.Rnw’ using Sweave
    Loading required package: Rgraphviz
    Loading required package: graph
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Loading required package: grid
    Loading required namespace: dagitty
    Loading required package: igraph
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:graph':
    
     degree, edges, intersection, union
    
    The following objects are masked from 'package:BiocGenerics':
    
     normalize, path, union
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Graph is not amenable
    
    Loading required package: ggplot2
    --- finished re-building 'vignette2018.Rnw'
    
    SUMMARY: processing the following file failed:
     ‘pcalgDoc.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64

Version: 2.7-0
Check: installed package size
Result: NOTE
     installed size is 7.6Mb
     sub-directories of 1Mb or more:
     data 2.1Mb
     libs 2.3Mb
Flavor: r-oldrel-windows-ix86+x86_64