MALDIquant: Quantitative Analysis of Mass Spectrometry Data

A complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.

Version: 1.22.2
Depends: R (≥ 4.0.0), methods
Imports: parallel
Suggests: knitr, testthat (≥ 0.8)
Published: 2024-01-22
DOI: NA
Author: Sebastian Gibb ORCID iD [aut, cre], Korbinian Strimmer ORCID iD [ths], Sigurdur Smarason [ctb], Laurent Gatto ORCID iD [ctb], Paolo Inglese [ctb]
Maintainer: Sebastian Gibb <mail at sebastiangibb.de>
BugReports: https://github.com/sgibb/MALDIquant/issues/
License: GPL (≥ 3)
URL: https://strimmerlab.github.io/software/maldiquant/, https://github.com/sgibb/MALDIquant/
NeedsCompilation: yes
Citation: MALDIquant citation info
Materials: NEWS
In views: ChemPhys
CRAN checks: MALDIquant results

Documentation:

Reference manual: MALDIquant.pdf
Vignettes: MALDIquant: Quantitative Analysis of Mass Spectrometry Data

Downloads:

Package source: MALDIquant_1.22.2.tar.gz
Windows binaries: r-devel: MALDIquant_1.22.2.zip, r-release: MALDIquant_1.22.2.zip, r-oldrel: MALDIquant_1.22.2.zip
macOS binaries: r-release (arm64): MALDIquant_1.22.2.tgz, r-oldrel (arm64): MALDIquant_1.22.2.tgz, r-release (x86_64): MALDIquant_1.22.2.tgz, r-oldrel (x86_64): MALDIquant_1.22.2.tgz
Old sources: MALDIquant archive

Reverse dependencies:

Reverse depends: MALDIquantForeign, MALDIrppa, MGMS2, MSclassifR
Reverse imports: IsoCor, maldipickr, MSnbase
Reverse suggests: RforProteomics, xcms

Linking:

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