NCutYX: Clustering of Omics Data of Multiple Types with a Multilayer Network Representation

Omics data come in different forms: gene expression, methylation, copy number, protein measurements and more. 'NCutYX' allows clustering of variables, of samples, and both variables and samples (biclustering), while incorporating the dependencies across multiple types of Omics data. (SJ Teran Hidalgo et al (2017), <doi:10.1186/s12864-017-3990-1>).

Version: 0.1.0
Depends: R (≥ 3.4)
Imports: Rcpp (≥ 0.12.2), glmnet (≥ 2.0-5), MASS (≥ 7.3-47), mvtnorm (≥ 1.0-6), fields (≥ 9.0)
LinkingTo: Rcpp, RcppEigen
Suggests: knitr, rmarkdown
Published: 2018-02-09
Author: Sebastian J. Teran Hidalgo, Shuangge Ma, Ruofan Bie
Maintainer: Sebastian J. Teran Hidalgo <sebastianteranhidalgo at gmail.com>
BugReports: https://github.com/Seborinos/NCutYX/issues
License: GPL-3
URL: https://github.com/Seborinos/NCutYX
NeedsCompilation: yes
Materials: README
CRAN checks: NCutYX results

Downloads:

Reference manual: NCutYX.pdf
Vignettes: The NCutYX package
Package source: NCutYX_0.1.0.tar.gz
Windows binaries: r-devel: NCutYX_0.1.0.zip, r-devel-gcc8: NCutYX_0.1.0.zip, r-release: NCutYX_0.1.0.zip, r-oldrel: NCutYX_0.1.0.zip
OS X binaries: r-release: NCutYX_0.1.0.tgz, r-oldrel: NCutYX_0.1.0.tgz

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