PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) <arXiv:1809.09014>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.

Version: 0.1.6
Depends: R (≥ 3.1.0), Rcpp, methods
Imports: PCMBase, data.table, abind
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, rmarkdown, covr
Published: 2019-11-11
Author: Venelin Mitov [aut, cre, cph]
Maintainer: Venelin Mitov <vmitov at gmail.com>
BugReports: https://github.com/venelin/PCMBaseCpp/issues
License: GPL (≥ 3.0)
URL: https://github.com/venelin/PCMBaseCpp, https://venelin.github.io/PCMBase/
NeedsCompilation: yes
Citation: PCMBaseCpp citation info
Materials: README NEWS
CRAN checks: PCMBaseCpp results

Downloads:

Reference manual: PCMBaseCpp.pdf
Package source: PCMBaseCpp_0.1.6.tar.gz
Windows binaries: r-devel: PCMBaseCpp_0.1.6.zip, r-devel-gcc8: PCMBaseCpp_0.1.6.zip, r-release: PCMBaseCpp_0.1.6.zip, r-oldrel: PCMBaseCpp_0.1.6.zip
OS X binaries: r-release: PCMBaseCpp_0.1.6.tgz, r-oldrel: PCMBaseCpp_0.1.6.tgz
Old sources: PCMBaseCpp archive

Linking:

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