corrcoverage: Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping

Using a computationally efficient method, the package can be used to find the corrected coverage estimate of a credible set of putative causal variants from Bayesian genetic fine-mapping. The package can also be used to obtain a corrected credible set if required; that is, the smallest set of variants required such that the corrected coverage estimate of the resultant credible set is within some user defined accuracy of the desired coverage. Maller et al. (2012) <doi:10.1038/ng.2435>, Wakefield (2009) <doi:10.1002/gepi.20359>, Fortune and Wallace (2018) <doi:10.1093/bioinformatics/bty898>.

Version: 1.1.0
Depends: R (≥ 3.5.0)
Imports: magrittr, stats, matrixStats, Rcpp
LinkingTo: Rcpp
Suggests: covr, dplyr, knitr, mvtnorm, rmarkdown, testthat, pkgdown
Published: 2019-09-05
Author: Anna Hutchinson [aut, cre], Chris Wallace [aut], Kevin Kunzmann [ctb]
Maintainer: Anna Hutchinson <anna.hutchinson at mrc-bsu.cam.ac.uk>
BugReports: https://github.com/annahutch/corrcoverage/issues
License: MIT + file LICENSE
URL: https://annahutch.github.io/corrcoverage
NeedsCompilation: yes
SystemRequirements: C++11
Materials: README NEWS
CRAN checks: corrcoverage results

Downloads:

Reference manual: corrcoverage.pdf
Vignettes: Corrected Credible Set
Useful Info
From GWAS Summary Statistics to Credible Sets
Correcting the Coverage of Credible Sets
Package source: corrcoverage_1.1.0.tar.gz
Windows binaries: r-devel: corrcoverage_1.1.0.zip, r-devel-gcc8: corrcoverage_1.1.0.zip, r-release: corrcoverage_1.1.0.zip, r-oldrel: corrcoverage_1.1.0.zip
OS X binaries: r-release: corrcoverage_1.1.0.tgz, r-oldrel: corrcoverage_1.1.0.tgz
Old sources: corrcoverage archive

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