hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Version: 0.9.4-2
Depends: R (≥ 3.2)
Imports: bamsignals (≥ 1.10.0), Biostrings (≥ 2.46.0), data.table (≥ 1.11.4), GenomicRanges (≥ 1.30.3), GenomicTools.fileHandler (≥ 0.1.4), httr (≥ 1.3.1), IRanges (≥ 2.12.0), KernSmooth (≥ 2.23-15), knitr (≥ 1.20), MASS (≥ 7.3-31), R.utils (≥ 2.6.0), RCurl (≥ 1.95), rmarkdown (≥ 1.10), Rsamtools (≥ 1.30.0), S4Vectors (≥ 0.16.0), seqinr (≥ 1.0-2), stringr (≥ 1.3.1), XML (≥ 3.98-1.1)
Published: 2019-02-12
Author: Daniel Fischer [aut, cre], Anu Sironen [aut]
Maintainer: Daniel Fischer <daniel.fischer at luke.fi>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: ChangeLog
CRAN checks: hoardeR results

Downloads:

Reference manual: hoardeR.pdf
Vignettes: An Introduction to hoardeR
Package source: hoardeR_0.9.4-2.tar.gz
Windows binaries: r-devel: hoardeR_0.9.4-2.zip, r-devel-gcc8: hoardeR_0.9.4-2.zip, r-release: hoardeR_0.9.4-2.zip, r-oldrel: hoardeR_0.9.4-2.zip
OS X binaries: r-release: not available, r-oldrel: not available
Old sources: hoardeR archive

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