nandb: Number and Brightness Image Analysis

Calculation of molecular number and brightness from fluorescence microscopy image series. The software was published in a 2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.

Version: 2.0.2
Depends: R (≥ 3.1)
Imports: Rcpp (≥ 1.0.1), filesstrings (≥ 3.1.3), magrittr (≥ 1.5), autothresholdr (≥ 1.3.3), dplyr, stringr (≥ 1.2.0), purrr, checkmate (≥ 1.9.3), detrendr (≥ 0.6.2), ijtiff (≥ 2.0.0), rlang (≥ 0.3.3), reshape2, viridis, glue (≥ 1.3.0), BBmisc, ggplot2, assertthat, withr (≥ 2.1.0), utils
LinkingTo: Rcpp (≥ 1.0.1)
Suggests: knitr, rmarkdown, covr, testthat (≥ 2.1.0), abind, tidyr, gridExtra, pacman, matrixStats (≥ 0.50.0), spelling
Published: 2019-06-17
Author: Rory Nolan ORCID iD [aut, cre, cph], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at gmail.com>
BugReports: https://github.com/rorynolan/nandb/issues
License: BSD_3_clause + file LICENSE
URL: https://rorynolan.github.io/nandb, https://github.com/rorynolan/nandb
NeedsCompilation: yes
Language: en-US
Citation: nandb citation info
Materials: NEWS
CRAN checks: nandb results

Downloads:

Reference manual: nandb.pdf
Vignettes: Batch mode
Brightness timeseries
Calculating brightness with single images
Package source: nandb_2.0.2.tar.gz
Windows binaries: r-devel: nandb_2.0.2.zip, r-release: nandb_2.0.2.zip, r-oldrel: nandb_2.0.0.zip
OS X binaries: r-release: nandb_2.0.1.tgz, r-oldrel: nandb_2.0.0.tgz
Old sources: nandb archive

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