Installing ordinalbayes

  1. Install JAGS https://mcmc-jags.sourceforge.io
  2. Install R https://cran.r-project.org
  3. Install runjags which is hosted on CRAN and http://runjags.sourceforge.net
  4. Install Bioconductor packages
  1. See https://www.bioconductor.org/install/ to install base Bioconductor packages
  2. To run examples using finalSet and reducedSet the DESeq2 package is needed. To install run > BiocManager::install(“DESeq2”)
  1. Install ordinalbayes using
  1. within R use > install.packages(“ordinalbayes”) or
  2. devtools::install_github(“kelliejarcher/ordinalbayes”, build_vignettes = TRUE) This latter command takes longer because the vignette needs to be built.