seqmagick: Sequence Manipulation Utilities

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Version: 0.1.7
Depends: R (≥ 3.6.0)
Imports: Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.1)
Suggests: downloader, knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc
Published: 2024-01-09
DOI: 10.32614/CRAN.package.seqmagick
Author: Guangchuang Yu ORCID iD [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu at>
License: Artistic-2.0
NeedsCompilation: no
Materials: NEWS
CRAN checks: seqmagick results


Reference manual: seqmagick.pdf
Vignettes: seqmagick introduction


Package source: seqmagick_0.1.7.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): seqmagick_0.1.7.tgz, r-oldrel (arm64): seqmagick_0.1.7.tgz, r-release (x86_64): seqmagick_0.1.7.tgz, r-oldrel (x86_64): seqmagick_0.1.7.tgz
Old sources: seqmagick archive

Reverse dependencies:

Reverse imports: ggmsa
Reverse suggests: MicrobiotaProcess


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