simode: Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching

Implements statistical inference for systems of ordinary differential equations, that uses the integral-matching criterion and takes advantage of the separability of parameters, in order to obtain initial parameter estimates for nonlinear least squares optimization. Dattner & Yaari (2018) <doi:10.48550/arXiv.1807.04202>. Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>. Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.

Version: 1.2.2
Depends: R (≥ 3.4.0)
Imports: deSolve, pracma, quadprog, glmnet, ncvreg
Suggests: parallel, knitr, testthat (≥ 3.0.0), rmarkdown
Published: 2024-02-16
DOI: 10.32614/CRAN.package.simode
Author: Itai Dattner [aut], Rami Yaari [aut, cre]
Maintainer: Rami Yaari <ramiyaari at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: simode results


Reference manual: simode.pdf
Vignettes: simode


Package source: simode_1.2.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): simode_1.2.2.tgz, r-oldrel (arm64): simode_1.2.2.tgz, r-release (x86_64): simode_1.2.2.tgz, r-oldrel (x86_64): simode_1.2.2.tgz
Old sources: simode archive


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